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Rosetta 3 - Applications
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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1,700 |
by danpf Fri, 2020-02-21 18:37 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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2,966 |
by danpf Fri, 2020-02-21 18:32 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,437 |
by danpf Fri, 2020-02-21 18:23 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,327 |
by danpf Fri, 2020-02-21 17:05 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,463 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
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2,120 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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5,436 |
by rmoretti Thu, 2020-01-30 15:42 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,466 |
by jadolfbr Tue, 2020-01-28 09:13 |
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appropriate sampling for protein docking to a multi chain assembly by SWM » Fri, 2020-01-24 11:22 |
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886 |
by SWM Fri, 2020-01-24 11:22 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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956 |
by SWM Fri, 2020-01-24 07:35 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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1,644 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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2,106 |
by Martin Floor Tue, 2020-01-21 11:15 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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1,679 |
by aloshbau Fri, 2020-01-10 16:48 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
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2,338 |
by dnamkr Mon, 2019-12-30 11:43 |
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Can remodel really handle multiple insertions in one simulation? by lanselibai » Sat, 2019-12-28 12:51 |
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936 |
by lanselibai Sat, 2019-12-28 12:51 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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2,312 |
by lanselibai Fri, 2019-12-27 09:38 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
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2,504 |
by dnamkr Thu, 2019-12-26 10:22 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
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1,048 |
by pwging13 Thu, 2019-12-19 09:53 |
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using DARC in rosetta by syntekabio2019 » Thu, 2019-12-12 01:27 |
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1,013 |
by syntekabio2019 Thu, 2019-12-12 01:27 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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1,377 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Docking the border segments of coiled coils in parallel orientation by Corvin » Mon, 2019-12-02 02:00 |
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1,011 |
by Corvin Mon, 2019-12-02 02:00 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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1,449 |
by JackMaguire Fri, 2019-11-22 13:45 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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5,386 |
by dantimatter Wed, 2019-11-06 09:51 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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2,507 |
by mags33 Wed, 2019-11-06 09:35 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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2,134 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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3,581 |
by rmoretti Mon, 2019-11-04 13:56 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
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1,286 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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3,563 |
by dantimatter Wed, 2019-10-30 09:43 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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8,495 |
by Genta Tue, 2019-10-29 18:46 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,526 |
by smlewis Tue, 2019-10-22 09:45 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,901 |
by hdelrisco Fri, 2019-10-18 17:16 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,525 |
by danpf Wed, 2019-10-16 13:03 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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6,462 |
by Corvin Tue, 2019-10-15 01:12 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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1,646 |
by danpf Thu, 2019-10-10 09:55 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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2,331 |
by Corvin Thu, 2019-10-10 01:12 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
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945 |
by CATarr Wed, 2019-10-09 19:05 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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5,378 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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1,340 |
by smlewis Fri, 2019-09-27 11:54 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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2,695 |
by maruhuang Thu, 2019-09-26 18:52 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,674 |
by smlewis Tue, 2019-09-24 12:43 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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3,365 |
by smlewis Mon, 2019-09-23 11:42 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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2,039 |
by mxp Mon, 2019-09-23 01:40 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,540 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,543 |
by rmoretti Wed, 2019-09-18 10:36 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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2,753 |
by rmoretti Wed, 2019-09-18 10:21 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,933 |
by Danielsebas Tue, 2019-09-17 01:03 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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1,529 |
by smlewis Mon, 2019-09-16 12:22 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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2,386 |
by danpf Mon, 2019-09-16 09:51 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,625 |
by Danielsebas Wed, 2019-09-11 00:44 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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2,123 |
by Danielsebas Sun, 2019-09-08 02:08 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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1,082 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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3,182 |
by danpf Fri, 2019-09-06 11:29 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,865 |
by Ruska322 Fri, 2019-09-06 07:13 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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2,533 |
by Danielsebas Thu, 2019-09-05 03:35 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,455 |
by danpf Tue, 2019-09-03 10:15 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
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2,113 |
by Danielsebas Sun, 2019-09-01 02:38 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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3,314 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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2,594 |
by Corvin Tue, 2019-08-27 00:46 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,768 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,946 |
by rmoretti Mon, 2019-08-26 12:57 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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1,700 |
by rmoretti Mon, 2019-08-26 12:49 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,448 |
by rmoretti Mon, 2019-08-26 12:17 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,465 |
by rmoretti Mon, 2019-08-26 12:03 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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1,158 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,892 |
by rmoretti Sun, 2019-08-25 19:15 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,480 |
by everyday847 Fri, 2019-08-23 04:08 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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1,008 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,801 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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2,425 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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1,020 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
7,179 |
by mxp Mon, 2019-08-12 18:42 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
4,367 |
by Yero Thu, 2019-07-18 01:39 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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1,688 |
by rmoretti Wed, 2019-07-10 10:10 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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2,099 |
by rmoretti Wed, 2019-07-10 09:47 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,548 |
by rmoretti Wed, 2019-07-10 09:24 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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2,301 |
by rmoretti Wed, 2019-07-10 09:22 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
4,330 |
by rmoretti Tue, 2019-07-09 10:13 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
2,143 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
2,550 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
2,040 |
by orionshih Wed, 2019-06-26 03:54 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,832 |
by rmoretti Mon, 2019-06-24 15:19 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,520 |
by rmoretti Mon, 2019-06-24 14:42 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
1,600 |
by rmoretti Mon, 2019-06-24 14:39 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
1 |
2,004 |
by rmoretti Mon, 2019-06-24 13:46 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,764 |
by rmoretti Mon, 2019-06-24 13:43 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,841 |
by jeliazkov Mon, 2019-06-17 06:03 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,521 |
by vmulligan Thu, 2019-06-13 15:01 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,938 |
by vmulligan Thu, 2019-06-13 14:59 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,785 |
by esozdemir Thu, 2019-06-13 12:19 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
2 |
2,450 |
by Corvin Wed, 2019-06-12 00:04 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
7,202 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
2,245 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,680 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
2,348 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
3,369 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,726 |
by ajasja Wed, 2019-05-15 15:40 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
1,641 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,750 |
by rmoretti Thu, 2019-05-09 15:40 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,956 |
by rmoretti Fri, 2019-04-26 12:13 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,778 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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