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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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7,957 |
by admin Fri, 2015-09-04 16:17 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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984 |
by kalabharath Mon, 2020-06-29 06:59 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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760 |
by CameronJA Mon, 2021-06-14 16:12 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,644 |
by DanielK Mon, 2014-04-21 06:47 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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1,175 |
by bio_james Wed, 2017-12-13 09:13 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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1,147 |
by bazzoli Wed, 2018-10-10 01:59 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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569 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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415 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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1,114 |
by BioPython Sun, 2019-05-12 20:07 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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838 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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Segmentation Fault by ileanexis » Mon, 2024-03-11 08:53 |
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171 |
by ileanexis Mon, 2024-03-11 08:53 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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662 |
by tlopes Wed, 2022-01-05 18:19 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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1,168 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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885 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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742 |
by guowuchen Thu, 2022-06-23 04:43 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,593 |
by tevang Mon, 2014-04-21 06:47 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
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1,533 |
by exchhattu Mon, 2014-04-21 06:47 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,290 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,249 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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1,182 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Replacing a single residue in a structure by Wexter300 » Sat, 2023-09-16 14:23 |
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531 |
by Wexter300 Sat, 2023-09-16 14:23 |
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protein-protein docking by LUOD » Thu, 2023-11-02 18:23 |
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285 |
by LUOD Thu, 2023-11-02 18:25 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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1,076 |
by Anpu Thu, 2018-09-27 23:36 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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524 |
by Hyun Tue, 2022-03-29 19:53 |
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Error about using BuildDeNovoBackboneMover by ng98 » Wed, 2024-05-29 01:47 |
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38 |
by ng98 Wed, 2024-05-29 01:47 |
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Rigidifying ligand by Daniel_Levin » Sun, 2024-02-18 12:10 |
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331 |
by Daniel_Levin Sun, 2024-02-18 12:10 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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1,099 |
by yangshen12 Fri, 2018-10-26 12:34 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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426 |
by wwwmrzkwww Wed, 2023-04-26 12:35 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,522 |
by albumns Mon, 2014-04-21 06:47 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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619 |
by mb0261 Tue, 2022-12-06 10:16 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,620 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
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395 |
by seamoon Wed, 2023-05-24 07:46 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
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2,409 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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1,056 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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1,132 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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448 |
by Brian Wiley Sat, 2023-02-04 23:43 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,847 |
by anirbanzz Mon, 2014-04-21 06:47 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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1,163 |
by ac.research Mon, 2018-05-14 08:27 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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469 |
by xuezhi Wed, 2023-02-15 14:00 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,529 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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837 |
by cryosky Sun, 2021-09-26 13:24 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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523 |
by NingNing Tue, 2022-08-09 17:36 |
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Error when running AqueousPoreFinder protocol by mluengo » Mon, 2023-12-11 02:55 |
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300 |
by mluengo Mon, 2023-12-11 03:13 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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1,109 |
by matteoferla Fri, 2021-02-26 07:12 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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625 |
by Robertofg Tue, 2022-11-22 00:34 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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1,322 |
by Jhreed Fri, 2016-07-08 13:44 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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926 |
by matteoferla Wed, 2020-07-22 03:08 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,338 |
by matteoferla Fri, 2020-04-10 02:40 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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700 |
by lsong2 Thu, 2021-11-18 10:31 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,433 |
by fmerino Mon, 2017-10-16 04:02 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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724 |
by hanzhiz Thu, 2021-12-16 09:32 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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1,056 |
by pmit Thu, 2018-05-03 01:48 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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942 |
by nferruz Fri, 2020-08-28 06:05 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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631 |
by almeida85 Mon, 2022-09-19 07:22 |
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Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score by mrosam » Fri, 2024-04-19 07:57 |
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159 |
by mrosam Fri, 2024-04-19 07:57 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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928 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
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380 |
by JasonIsaac Sat, 2023-06-17 00:20 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,666 |
by myang Mon, 2014-04-21 06:47 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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1,163 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
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468 |
by Brian Wiley Sun, 2023-02-12 20:46 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,526 |
by sayan500 Tue, 2019-07-30 22:20 |
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Is it impossible to use the ddg_monomer function on a non-monomeric structure? by Wexter300 » Sat, 2024-05-25 14:16 |
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42 |
by Wexter300 Sat, 2024-05-25 14:16 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,652 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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993 |
by ate Sat, 2021-05-01 02:52 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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525 |
by mrosam Mon, 2022-08-08 01:37 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,584 |
by ctaylor Mon, 2014-04-21 06:47 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
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1,894 |
by jurkm Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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568 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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1,080 |
by LTJ Mon, 2020-07-06 14:13 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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773 |
by ate Wed, 2021-06-16 19:19 |
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Cartesian_ddG mutfile error by paulbo » Mon, 2024-02-05 01:25 |
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418 |
by paulbo Mon, 2024-02-05 01:25 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,745 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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1,041 |
by matteoferla Sun, 2020-03-22 05:29 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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1,077 |
by rohi Thu, 2020-10-15 10:28 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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631 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,559 |
by gobli033 Mon, 2014-04-21 06:47 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
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193 |
by JSK Tue, 2024-03-19 09:21 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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984 |
by YuFei Wed, 2020-04-22 17:27 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,316 |
by jackzzs Mon, 2023-05-15 03:17 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,794 |
by exchhattu Mon, 2014-04-21 06:47 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,221 |
by fgomes Fri, 2019-11-22 19:12 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,589 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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839 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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578 |
by biotech Wed, 2022-10-26 11:17 |
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How do I implement more CPU cores in the execution of FlexPepDock? by ChoripanSalado » Thu, 2024-05-02 08:55 |
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166 |
by ChoripanSalado Thu, 2024-05-02 08:55 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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963 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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604 |
by Jane_002 Tue, 2023-08-08 21:07 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,485 |
by albumns Mon, 2014-04-21 06:47 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,656 |
by sdh Mon, 2014-04-21 06:47 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,814 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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1,183 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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1,264 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
0 |
928 |
by rvandamme Mon, 2021-02-01 13:39 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
0 |
486 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,552 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,524 |
by tricia Mon, 2014-04-21 06:47 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
944 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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883 |
by Corvin Wed, 2021-05-19 07:54 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,746 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,639 |
by vasek Mon, 2014-04-21 06:48 |
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