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Karakaş M, Woetzel N, Meiler J (2010)
BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination.
J Comput Biol 17:153-68 -
DeCaen PG, Yarov-Yarovoy V, Sharp EM, Scheuer T, Catterall WA (2009)
Sequential formation of ion pairs during activation of a sodium channel voltage sensor.
Proc Natl Acad Sci U S A 106:22498-503 -
Chaudhury S, Gray JJ (2009)
Identification of structural mechanisms of HIV-1 protease specificity using computational peptide docking: implications for drug resistance.
Structure 17:1636-48 -
Kleiger G, Saha A, Lewis S, Kuhlman B, Deshaies RJ (2009)
Rapid E2-E3 assembly and disassembly enable processive ubiquitylation of cullin-RING ubiquitin ligase substrates.
Cell 139:957-68 -
Butterfoss GL, Renfrew PD, Kuhlman B, Kirshenbaum K, Bonneau R (2009)
A preliminary survey of the peptoid folding landscape.
J Am Chem Soc 131:16798-807 -
Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D (2009)
Exploitation of binding energy for catalysis and design.
Nature 461:1300-4 -
Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D (2009)
Exploitation of binding energy for catalysis and design.
Nature 461:1300-4 -
Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D (2009)
Simultaneous prediction of protein folding and docking at high resolution.
Proc Natl Acad Sci U S A 106:18978-83 -
Mandell DJ, Kortemme T (2009)
Computer-aided design of functional protein interactions.
Nat Chem Biol 5:797-807 -
Nunn BL, Aker JR, Shaffer SA, Tsai S, Strzepek RF, Boyd PW, Freeman TL, Brittnacher M, Malmström L, Goodlett DR (2009)
Deciphering diatom biochemical pathways via whole-cell proteomics.
Aquat Microb Ecol 55:241-253