I tried it with rna_denovo.mpi.linuxgccrelease and it threw an error after searching for database.
Hello everyone,
I would like to ask what is the right procedure to compile Rosetta 3.10 with APBS to use the SetupPoissonBoltzmannPotential mover.
Good afternoon,
I downloaded the rosetta bundle with binaries for the Mac. When trying to compile the suite with ‘./scons.py mode=release bin’ I keep getting this error message.
src/protocols/antibody/database/CDRSetOptionsParser.cc:81:8: error: reference to 'core' is ambiguous
for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) {
^
src/core/types.hh:32:11: note: candidate found by name lookup is 'core'
namespace core {
^
Hello, please note I'm revising my posting with some major updates, apologies to the 9 viewers who have come here prior as this will read completely different.
I'm encountering a read error with antibody_H3. Below is the executable I ran (I've also reproduced the error with .static mode):
mpiexec -np 4 $ROSETTA3/bin/antibody_H3.cxx11threadmpiserialization.linuxgccrelease \
@abH3.flags
abH3.flags looks just like:
I have installed rosetta3 on HPC. How can I perform benchmarking tests to find out how many cpu or gpu nodes are required for running rosetta on HPC? Are these tests separate for each rossetta application?
- OS type/version/arch:
Linux Ubuntu 16.04 (on an Azure virtual machine)
- Python version:
3.5
- Version of PyRosetta including SVN revision number.
PyRosetta4.Release.python35.ubuntu.release-236.tar.bz2
- Version of Rosetta:
Rosetta 3.11 for Linux
Hello, I've installed PyRosetta and upon importing in Python3.5 I receive the following error:
Hi,everyone:
Anyone can help me to solve this error:
Traceback (most recent call last): File "./scons.py", line 187, in import SCons.Script ImportError: No module named SCons.Script
Thank you very much!
Hi All,
I have downloaded Rosetta 3.11 and built it with Scons.py using
$ ./scons.py -j 4 mode=release bin
The building of the binaries seems to work correctly providing me with:
scons: done building targets.
I am now attempting to familiarize myself with Rosetta by traversing the tutorials starting with the Input & Output Tutorial so I am within this directory:
Intel compiler has problem dealing with defaulted and virtualized copy assignment operator, reported here.
https://software.intel.com/en-us/forums/intel-c-compiler/topic/837004
Because of this bug, compilation with intel compiler fails at `rosetta_bin_linux_2019.35.60890_bundle/main/source/src/protocols/genetic_algorithm/Entity.hh` line 55.
By implementing it explicitly, or removing "virtual" seems to be a solution.
I am in the stage of trying to install and build rosetta and I have reached the point where I am using scons.py.
I have been following the guide (https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build) so far, but I reach a road block when I build with scons.py. my commands and the results are as follows:
