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Compilation

Adding included libries to scons

Category: 
Compilation

Hello.

I am running a pilot app which uses a test class that requires the cxx test header. I was able to include the path to the compiler by using the -I parameter. However when I try to use scons to build the pilot app executable I don't know how to get scons to add in the extra -I parameter.

Thank you.

Post Situation: 

Intel Compiler - Inaccurate G! step errors

Category: 
Compilation

Hi,

We are trying to get Rosetta setup fo a user here at UT Southwestern, and have downloaded and built the 2015.39 release using the Intel Composer XE 2015 compiler suite, with MVAPICH2 2.1 as the MPI stack. This is the standard compiler/mpi stack we use for a large amount of other software on the cluster. Compilation of Rosetta followed the site settings file distributed for the TACC stampede cluster.

When the user runs a simple test of relax.linuxiccrelease:

Post Situation: 

Unit tests on a non-Intel CPU

Category: 
Compilation

Hello Rosetta forum!

I've been trying to run Rosetta (2015wk39) on an IBM Power8 machine. It has 64-bit PowerPC processors, which, according to our CS department, have been set up to work with little-endian byte ordering. Rosetta compiles fine* but I've been getting failures when running unit-tests.

I've attached the full log, and the epilogue is attached inline at the end of this message. Of all failed tests, I can only find details to the test_rotamer_trials test, which have the following error:

Post Situation: 

what is the xxx.static.linuxgccrelease?

Category: 
Compilation

Hello

 

I have a some question.

 

I downloaded Rosetta 2015.38 source + binaries for Linux .

and I saw xxx.static.linuxgccrelease and xxx.linuxgccrelease in bin folder.

which exe is proper when I want to execute file with mpiexec command?

 

Post Situation: 

RASREC full_run vs. test_run

Category: 
Compilation

Dear Rosetta users, 

I'm using RASREC CS-Rosetta 3.5 to pridect the structure of a membrane protein. So far I've added the following files to the setup_run: CS file (NMR data), FASTA and Fragment files. I've tried to add the Span and Lips files in the setup_run, but I didn't know the commands for these types of files; I've tried -span <spanfile>  (and ) -lips <lipsfile>, but they weren't excepted this way! So what I did is add them manually to the flags_denovo file. 

Post Situation: 

RuntimeError: unidentifiable C++ exception in both linux and window.

Category: 
Compilation

When I use

pose = pose_from_pdb("1YY8.clean.pdb")

it results in an error:

RuntimeError Traceback (most recent call last)
<ipython-input-9-755d9c16f3f1> in <module>()
----> 1 pose = pose_from_pdb("1YY8.clean.pdb")

RuntimeError: unidentifiable C++ exception in both linux and window.

I need help in this regard...........................................

Post Situation: 

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