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build rosetta3 with gpu support failed

Submitted by Sunyp_IM on Mon, 2017-07-03 17:48
Category: 
Compilation

I tried to install rosetta3 with gpu support with the follow command: 

 sudo ./scons.py -j 20 mode=release bin extras=opencl

but failed with the follow error message:

scons: *** [build/src/release/linux/3.10/64/x86/gcc/4.8/opencl/protocols/hotspot_hashing/SurfaceSearchPattern.os] Error 1
scons: building terminated because of errors.

My system is centos7 implemented with 2 c2050 gpu, and cuda-8.0 has been installed in the system. Why does the error occurs? Is there some way to solve this problem?

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Rosetta 3 - Build/Install

build error in linux-centos

Submitted by Vedasheersh on Wed, 2017-06-28 18:59
Category: 
Compilation

Hello everyone!

 I recently upgraded to CentOS7. So, I had to do a fresh installation of Rosetta. I am trying to build the latest version of rosetta with this command:-

$ sudo ./scons.py -j10 bin mode=release extras=static

The building terminates with an error like this:-

I think the same type of error is popping up while trying to compile different applications. Could someone help me with this?

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Rosetta 3 - Build/Install

Problems with output control

Submitted by Sunyp_IM on Thu, 2017-06-22 15:30
Category: 
Compilation

Dear all,

I am new to rosetta. I am studying the Rosetta tutorials and I am there is a problem with output path control. I followed the tutorial 4 (controlling input and output) and type the following command in the section "Setting output paths" of this tutorial into my CentOS 7 linux shell:

$> $ROSETTA3/bin/score_jd2.default.linuxgccrelease -in:file:s input_files/1qys.pdb -out:pdb -out:path output_files

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Rosetta 3 - General

Rosetta build error on MacOS Sierra

Submitted by Vedasheersh on Tue, 2017-06-13 22:27
Category: 
Compilation

Hello everyone!

I am trying to build rosetta with mpi in macOS sierra. But, it gives the following errors. 

I tried rebuilding without mpi (after deleting build/ contents), but it gives the same error.

Could any one please help?

$ sudo ./scons.py -j 3 mode=release bin extras=mpi

1 error generated.

scons: *** [build/src/release/macos/16.0/64/x86/clang/8.1/mpi/protocols/init/init.os] Error 1

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Rosetta 3 - Build/Install

Build with mpi error

Submitted by Vedasheersh on Mon, 2017-06-05 01:22
Category: 
Compilation

Hello everyone!

I am trying to install rosetta with mpi on CentOS 6.9. I installed openmpi and openmpi-devel using yum. I copied the file site.settings.topsail as site.settings and run the command './scons.py bin mode=release extras=mpi -j5'

I am getting the following error.

 

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Rosetta 3 - Build/Install

Rosetta 3.8 GPU compilation

Submitted by Martin Floor on Tue, 2017-05-23 06:01
Category: 
Compilation

Hello,

I am having an error while compiling Rosetta with GPU options. I am using the following command to build Rosetta 3.8 with opencl GPU options: 

scons mode=release extras=opencl bin

The log produced during the building of executables is as follows:

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Rosetta 3 - Build/Install

rosetta compile

Submitted by MA on Wed, 2017-04-26 00:46
Category: 
Compilation

Hi, I am beginner using rosetta, I used Scons to compile rosetta code and it is successful. I used Anjuta(IDE) to compile AbinitioRelax.cc and generated an AbinitioRelax.o file,when i used g++ to Compile it into executable file, it return the wrong information, as follows:

root@ma:/home/ma/rosetta/main/source/src/apps/public# g++ AbinitioRelax.o

AbinitioRelax.o: In function `main':

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Rosetta 3 - General

main/source/external/boost_1_55_0/boost/bimap/tags/ being ignored by git

Submitted by ipetrik_ambry on Thu, 2017-04-20 14:30
Category: 
Compilation

Hi,

I'm using git for version control while developing some additional score terms for internal use. We are not official developers, so I can't clone the official repo, so I just downloaded the source I need (2017.08), and ran the following to get a starting point for my development:

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Rosetta 3 - Build/Install

Error with DisjointSets while compiling Rosetta 3.8 using scons

Submitted by ipetrik_ambry on Thu, 2017-04-13 12:06
Category: 
Compilation

We have been working with rosetta 2016.32 for a while, which compiles just fine. recently we decided to upgrade to the 3.8 release (2017.08). compiling with 'scons mode=release' reuslts in the following error trace:

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Rosetta 3 - Build/Install

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