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Error MPI build rosetta2014.35 on Ubuntu14.04 LTS

Submitted by syoifczeri on Tue, 2014-12-16 02:35
Category: 
Compilation

Hello!

Recently, I posted some post about install Rosetta3.5 on cygwin.

Finally, I changed the OS and succeeded to install them on the Ubuntu on Virtual box(Win7)
Normal install was good. and docking protocol was worked(I only checked that exe).
./scons.py -j4 mode=release bin

But,I couldn't MPI install by follow command in another new Virtual machine. The first one hour from the beginning was good but I got some error.
I did all command as superuser

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Rosetta 3 - Build/Install

Variable unitialized warnings during compilation of Rosetta 3.5

Submitted by cossio on Mon, 2014-12-01 05:26
Category: 
Compilation

I am getting a lot of "unitialized" warnings during compilation of rosetta 3.5. See examples below (there is a lot more). I am using Ubuntu 14.04 amd64. I have gcc 4.8 and 4.7 installed. I am compiling with ./scons.py -j1 mode=release cxx_ver=4.7 bin.

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Rosetta 3 - Build/Install

rosetta default and mpi @ same tree?

Submitted by fred on Fri, 2014-11-28 05:53
Category: 
Compilation

Hi there,
Will rosetta default and mpi compilations coexists in the same directory tree?
I usually test flags with rosetta default to check things before launch the mpi process. However, I've experienced some weird behaviors after installing the last version 2014.35. Looks like something stupid but it's worth to check.
Best,
Fred

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Rosetta 3 - Build/Install

Modify and re-compile a single application in Rosetta

Submitted by wsgosal on Mon, 2014-11-24 04:26
Category: 
Compilation

Hi all,

I would like to make a change to the source code of a particular application - it's a very minor, but necessary, change that should make the application more broadly applicable.

However, having made the change in the .cc file - how would I go about recompiling the code so that it links to the rest of the Rosetta package, or is the simplest way just to recompile the whole package?

Thanks in advance.

wsg

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Rosetta 3 - Build/Install

Build Rosetta in cygwin with scons (Windows7)

Submitted by syoifczeri on Fri, 2014-11-21 03:19
Category: 
Compilation

Hello , I have been to trying build Rosetta in cygwin with scons to build large fusion protein.
I know here is not scons and cygwin forum...but I couldn't find recent post in another forum.

I installed scons 2.3.3 from binary(.tar.gz)
and added Path
PATH=cygdrive/c/Python27/Scripts
and
PATH=cygdrive/c/Python27

but I typed below command and got below error

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Rosetta 3 - Build/Install

Build error: FragmentPicker.cc:1406: error: 'j' is not a member of 'basic::options::OptionKeys::frags'

Submitted by linucks on Tue, 2014-11-18 08:30
Category: 
Compilation

Hi,

I'm trying to build Rosetta with MPI/boost on a linux system, and am using rosetta_2014.35.57232_bundle.

I'm invoking the build with:

python scons.py -j8 bin mode=release extras=boost,boost_thread,mpi

and the build is failing here:

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Rosetta 3 - Build/Install

Error installing rosetta2014.35 on Ubuntu14.04

Submitted by annalisa on Fri, 2014-10-31 12:25
Category: 
Compilation

Hello,

I am trying to install rosetta2014.35 on ubuntu14.04.
I installed the last versions of gcc and clang compilers, namely gcc-4.8 and clang-3.5

I installed the following packages and libraries as reccommanded

sudo apt-get install build-essential
sudo apt-get install zlib1g-dev
sudo apt-get update

and executed the commands

cd main/source/
scons bin mode=release

but unsuccessfully!! I always receive the same error (see below)

Also I updated g++ compilers on tools/build/site.setting. topsail file

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Rosetta 3 - Build/Install

Rosetta problems: terminate called after throwing an instance of 'std::string'

Submitted by Esbenjannik on Mon, 2014-10-27 02:09
Category: 
Compilation

Hi, Im new to Rosetta and these forums, but I have a problem running Rosetta. I’ve compiled on a CentOS machine, but I keep getting segmentation faults and crashes,

e.g. I try to run AbinitioRelax.default.linuxgccrelease --help

But it crashes in the midst of output with

rmsd_dump | 2 | R| dump all pdbs for loops that
| | | are below in rmsd
terminate called after throwing an instance of 'std::string'
Abort (core dumped)

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Rosetta 3 - Build/Install

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