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Compilation

Build problem "Never include <bits/libio.h> directly; use <stdio.h> instead."

Category: 
Compilation

Hi everyone,

I am trying to build Pyrosetta from source in Ubuntu 18.04 x64, but  I am having a compilation error, as indicated in the title.

Does anyone have a clue about what could be the issue or has a better idea to compile it?

I am using python 2.7.15, rosetta build 2018.33.60351, ninja 1.8.2, cmake 3.12.1 and gcc 4.8, specified with the global variables: CC=gcc-4.8 and CXX=g++-4.8. The error log is:

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pyrosetta with Parallel Studio XE

Category: 
Compilation

Hi,

I'd like to build pyrosetta with the intel compiler and potentially link against the Intel MKL for use on HPC infrastructure. I saw in the rosetta docs, that rosetta can already be used with the intel compiler on TACC resources:

 https://www.rosettacommons.org/docs/latest/build_documentation/TACC

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reporting bugs? (erraser in rosetta 3.10)

Category: 
Compilation

Hi,

Is this the right place to report bugs that have appeared in erraser?  If not, could someone point me to the correct location?

These appear to be occuring in the rosetta 3.10 release (some in python code, others appearing to be in c++ code); and do not appear in erraser from rosetta 3.7; and occur when using the demo example from https://www.rosettacommons.org/demos/latest/public/erraser/README.

 

Best,

Pete

Post Situation: 

99% success rate in unit test, Will it work?

Category: 
Compilation

I am new to Rosetta and trying to install in my workstation. After installation when I  ran the unit test, and it is showing like a 99% success rate. Is it ok to now run the program or I need to fix the issues? If not can you please help me out to fix that? 

After doing this, 

python test/run.py --mode=debug -j32

I am getting

Post Situation: 

Rosetta-based projects using and licensing

Category: 
Compilation

Dear Rosetta Team,

Is it possible to share a code of my Rosetta-dependent non-profit research project and upload it to a publicly accessible GitHub repository licensed under open source license? Is Rosetta License restricts that?

For example, I have "project" like this:

1. Source files that links to Rosetta headers:

Post Situation: 

Multistage_rosetta_scripts

Category: 
Compilation

Hello,

 

I would like to try the multistage_rosetta_scripts protocols. Unfortunately when I build rosetta the multistage_rosetta_scripts.XXX.release doesn't build.

I am a commercial user. Is this feature available for commercial users. I even downloaded the newest weekly release, 42.

 

Thanks

Post Situation: 

Issue compiling pyrosetta

Category: 
Compilation

Hi,

I'm having an issue compiling pyrosetta.  I'm using ubuntu16.04 and python3.7.  I'm using rosetta_src_2018.33.60351_bundle

I tried compiling with the following command:

>python build.py --create-package /opt/software/pyrosetta/pyrosetta37

and after a while, I get this error:

Post Situation: 

problem installing latest version of rosetta

Category: 
Compilation

Unable to build latest version of rosseta at below Linux workstation. Errors for python version not compatibile. Kindly let us know the rosetta version compatibile with below system specs? Also share the link to download the older version of rossetta software. 

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