I have an institutional email address: jixin@jsph.org.cn. I am a doctor at Nanjing Medical University first affliated Hospital, Nanjing, China, and I want to use the server for academic purpose only.
I have a ligand with which I am trying to design a pocket in a synthetic protein.
Now the ligand doesn't have any rotatble bonds, because it's carbon chain is full of conjugated bonds,
However it keeps isomerizing some of the bonds,
is there any way I could completly fix the carbon chain?
I have an institutional email address: asrivastava@erauniversity.in. I am a PhD student at Era's Lucknow Medical College & Hospital, Era University, Lucknow, Uttar Pradesh, India and I want to use the server for academic purpose only.
Hello,
I would like my academic email to be validated. Institute: RadboudUMC and domain: @radboudumc.nl
Best,
Charbel
EDIT: I would like to flag that I am a commercial user so a timely response from the developers would be greatly appreciated.
Hello Folks,
I would like to run PIPER-FlexPepDock for blind docking of a short peptide ligand to a receptor.
Hello, I tested local docking of AlphaRED (ReplicaDock2) protocol. As the mc steps, the fa_rep score increases rapidly.
Checking a trajectory with high fa_rep score, there are clashes between some residues. (e.g. 1st score and 2000th score)
Hello!
I'm new at Rosetta and was doing the tutorials for protein-protein docking. I execute the command below with no problems:
I'm doing protein-protein docking, in which the C-terminus of one of my protein chains (PDB: 2ew4) was amidated, and when I submitted it to Rosetta and ran docking_protocol.static.linuxgccrelease, I found that the amide was automatically disassembled, how can I make it so that it doesn't happen?
2ew4_ 1.pdb is the structure before docking, 2ew4_ 2.pdb is the structure after docking
