Hi, I'm trying to use simple_cycpep_predict to model the conformation of a disulfide linked cyclic peptide. The peptide has an amidated C terminus. I've been trying to get the patch Cterm_amidation working however it appears to ignore the patch.
A sample input sequence is:
CYS ALA ALA ALA ALA CYS ALA ALA ALA:Cterm_amidation
And here's my test input script: