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Unable to download Rosetta

Submitted by Yair Tenorio on Mon, 2023-10-23 11:48
Category: 
Phenix / MR Rosetta

Hello my name is Yair Tenorio from

Genetics and Molecular Biology Department at CINVESTAV México

I already have an account, I am registered and logged in, but when I try to

download Rosetta with my User Name and Password, is not letting me download the software

I hope you could help me, my domain is @cinvestav.mx

the web page tells me to verify my email, which I already did.

 

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Rosetta 3 - General

Segfault error while running MR Rosetta in Phenix

Submitted by memilton on Thu, 2021-12-16 09:09
Category: 
Phenix / MR Rosetta

Hello,

In the middle of my MR Rosetta run I got a "Failed to run REBUILD" error. I am at a completely loss for how to solve this problem. Error logs are attached.

I am running rosetta_src_2021.16.61629_bundle on Phenix 1.19.2-4158. I did notice the Phenix instructions for installing Rosetta mention using Rosetta version 3.10 or later, is that the reason for the fail?

Thank you!

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Rosetta 3 - Applications

rosetta for phenix directory cannot be found error

Submitted by Smith Lee on Tue, 2021-03-09 06:11
Category: 
Phenix / MR Rosetta


Dear All,

Based on "https://www.phenix-online.org/documentation/reference/rosetta_install.html" I have installed the recent rosetta_src_2020.08.61146_bundle, and I have included "export PHENIX_ROSETTA_PATH=/your-path-to-rosetta-here/" in my .bashrc and have it sourced, with"/your-path-to-rosetta-here/" as the directory containing "demos   main    tools".

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Rosetta 3 - Build/Install

rosetta for phenix directory cannot be found error

Submitted by Smith Lee on Tue, 2021-03-09 06:11
Category: 
Phenix / MR Rosetta


Dear All,

Based on "https://www.phenix-online.org/documentation/reference/rosetta_install.html" I have installed the recent rosetta_src_2020.08.61146_bundle, and I have included "export PHENIX_ROSETTA_PATH=/your-path-to-rosetta-here/" in my .bashrc and have it sourced, with"/your-path-to-rosetta-here/" as the directory containing "demos   main    tools".

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Forums: 
Rosetta 3 - Build/Install

Change in Gibbs free energy (delta delta G) of RNA

Submitted by wrshoemaker on Thu, 2017-01-26 15:47
Category: 
Phenix / MR Rosetta

Hello,

I'm trying to load a .pdb file for an RNA molecule, change a single base in the molecule, and calculate the change in free energy. I was looking at this tutorial (http://graylab.jhu.edu/pyrosetta/downloads/documentation/PyRosetta_Tutorial_2012.pdf) and it doesn't work with newer versions of PyRosetta. Has anyone else done something like this? The documentation hasn't been very helpful so far for RNA (though it's relatively extensive for protein).

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PyRosetta - Applications

rosetta_scripts_BOGUS coords warning message

Submitted by Karol on Tue, 2016-12-13 02:35
Category: 
Phenix / MR Rosetta

 

 Hi,

I am using rosetta scripts to build a protein into electron density.

However, I am getting some warning messages, which relate to my CYX residues. I understand the message itself, but I don't know why it appears, what it means to my structure and whether I should be worried about it. As I said, I have several CYS residues, which I mutated to CYX (CYX name in PDB file) and when I start my calculations I am getting the following warning message for all CYX residues:

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Rosetta 3 - General

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