You are here

Scoring

I_sc

Category: 
Scoring

Hello, I would like to use or be able to visualize in the score file some terms or information related to docking and similar protocols, for example, interface_score and rms in other scoring functions executing other movers. Can this be done with flags? I hope you can help me, thanks.

Post Situation: 

Question about running scallo

Category: 
Scoring

 I am trying to run code on https://github.com/strauchlab/scaffold_design

but it occur an error :

basic.io.database: [ WARNING ] Unable to locate database file scoring/score_functions/aa_composition/%%aa_comp%%.comp
Error: [ ERROR ] ERROR: Exception caught by JobDistributor while trying to get pose from job 'startingstub_0000_0008_0001'
Error: [ ERROR ] 

Post Situation: 

The energy terms in InterfaceAnalyzer

Category: 
Scoring

Dear All,

There are many energy terms in the output of the InterfaceAnalyzer, but is there any articles or other forms of materials  which explain the basic principals or mathematical formats for calculating these energy terms in detail? And How rosetta codes for them? If I wished to add some energy terms in InterfaceAnalyzer, What is an effective way to learn the coding for this propose? 

I will appreciate any help. With many thanks.

 

Post Situation: 

trRosetta - Nan occuring in Hbond calculation

Category: 
Scoring

Hi everyone, 

 I apologize in advance if I am missing out on any critical detail that is relevant for troubleshooting this, but i'm completely new to trRosetta so please bear with me.

Currently, I am trying to run it with an MSA in order to construct an ab initio model for a target protein but I keep running into the following error

----------

core.scoring.hbonds.hbonds_geom: [ ERROR ] NAN occurred in H-bonding calculations!

Post Situation: 

Help deciphering an input

Category: 
Scoring

Hey all! I am quite new to Rosetta and am using it for a project I am working on. My PI and I have found a paper in which we are wanting to use its code for minimizaiton and repacking but I really do not understand everything that is going on here. The code is as follows:

 

Post Situation: 

Pages

Subscribe to RSS - Scoring