Structure prediction

Is there any support in rosetta for writing out a PDB file with multiple configurations of the side-chains? I have a set of side-chain hypotheses at each residue along a fixed backbone and would like to visualize this as an ensemble. This is analogous to dumping a PDB file with a side-chain at every rotamer location in the Dunbrack rotamer set.

I think I know how to implement this from scratch, but if there is any built-in support along these lines that would be great.

Thanks,
Jason

Hi,
I have a couple of questions regarding Rosetta clustering and Calibur and I wasn't able to find an answer to them on the site
Which type of clustering algorithm is used in Rosetta clustering? EDIT:I meant to ask- when calculating the RMSD is the superimposing done pairwise in Rosetta clustering?

Hello ~
I'm interested in Pyrosetta
and learning the tutorial
Workshop #4: PyRosetta Folding
page 4
11. Create a new subroutine in your folding code for an alternate random move based upon a “fragment insertion”. A fragment insertion is the replacement of the torsion angles for a set of consecutive residues with new torsion angles pulled at random from a fragment library file. Prior to calling the subroutine, load the set of fragments from the fragment file:
fragset = ConstantLengthFragSet(3)

Dear friends,
I think there is nothing incorrect in my command line to extract PDB files from a silent file:

~/Cheng/rosetta_2014.30.57114_bundle/main/source/bin/score_jd2.linuxgccrelease -database ~/Cheng/rosetta_2014.30.57114_bundle/main/database -in:file:silent /mnt/hgfs/Downloads/silent.out -in:file:fullatom -in:file:silent_optH -out:output

The prompt goes well and completes successfully: