I am trying to use RosettaAntibodyDesigner without allowing any design elements of the protocol to occur. I understand 100% that this would remove the intended purpose and use cases of RAbD, however, I am trying to piecemeal a side-by-side comparison of a designed mAb (which works reat through this protocol) and a non-designed mAb.
However, I would like to ensure that both my simulations are executred identially otherwise. (ie., loop flexibility in docking, etc).
Is there any way to runn RAbD while FIXing all the CDRs?