Solved

Dear fellows,

thank you for the newly rewritten version of make_fragments.pl in Rosetta 3.4 ... it came just in time when I was struggling with the old one! In my hands/case though, there was a problem with the inclusion of secondary structure prediction from pre-calculated files. (It worked well when files were calculated on the fly with psipred / SAM installed.)

I'll try to be exact with my description of the errors in the current version:

Dear fellows,

thank you for the newly rewritten version of make_fragments.pl in Rosetta 3.4 ... it came just in time when I was struggling with the old one! In my hands/case though, there was a problem with the inclusion of secondary structure prediction from pre-calculated files. (It worked well when files were calculated on the fly with psipred / SAM installed.)

I'll try to be exact with my description of the errors in the current version:

Dear All,

Because I cannot build Rosetta 3.4 on Mac OS X Lion yet, I tried a virtual machine of Fedora 15 with VirtualBox. Here I describe some issues:

1. After installing Fedora I made the following updates / installations:
$ sudo yum install scons
$ sudo yum update gcc-c++

2. I run the following command in the source code folder of Rosetta:

$ scons bin mode=release

3. When compiling, the process stopped because of the following errors:

$ g++-4.6: command not found
$ gcc-4.6: command not found

4. So I checked the version of the compiler:

$ gcc -v

Cygwin support has been troublesome for the Rosetta community. Nobody in the community uses Windows or cygwin for development work, and generally we don't even have a cygwin build available for testing. We have de facto not supported cygwin for a while, in the sense that most cygwin problems stumped us. Until this situation changes we are no longer supporting cygwin. Feel free to post your questions on this board anyway; perhaps other cygwin users will be able to help.