i have suplied Farafar2 with an RNA sequences of length 47. the server returns a complete circular structure. i dont have a template and am just giving the fasta file. when i give the dot-bracket structure along with the fasta file, it returns an error too.
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The problem hasn't been solved
So, I have a code that is supposed to design an enzyme with constraints taken into account. I started it once, looping through a folder of pdb files (that one is still running, takes a while to design 375 pdb files), then just changed which folder and pdb files it would work with. Unfortunately, I then got an error message that cuts off before actually giving the error:
I was trying to run rosetta match with Rosetta/main/source/bin/match.linuxgccrelease
The match was done successfully with older version of rosetta, but didn't work with Rosetta 3.10. It aborted because of an error of "ERROR: Assertion 'build_sets_[ build_set_id ].restype().has( "1HA" ) failed. ERROR:: Exit from: src/protocols/match/upstream/ProteinUpstreamBuilder.cc line 1210". I was wondering if there's a way to fix this. Many thanks.
I am trying to set up the PyMOLMover object to view structure manipulations. We have PyRosetta set up on a compter cluster, and I was going to have it run scripts and send structure info to another PyMOL instance on a separate computer on the same network - however it errors out when trying to assign an IP address to the link.udp_ip attribute. The code is simple and pulled straight from the following documentation/tutorial: http://www.pyrosetta.org/pymol_mover-tutorial
I have been trying to find a solution to RosettaDesign where it can reliably design proteins.
I have tried the following protocols:
FIXBB with resfile - faield FIXBB - faield FLXBB with blueprint - failed FLXBB - failed Remodel - failed
In each protocol I choose the lowest scoring decoy from 100 generated decoys. I run an abinitio simulation (25,000 decoys) but I do not get a funnel shaped plot.
I am trying to compile minirosetta for a legacy application, but the scons file has a problem with my GCC and even clang build. I get this error on compile attempt, and I have sucessfully compiled the most recent rosetta build on other ocassions.
when i build the denovo_density.cc,i got this problem:
/usr/bin/ld: cannot find -lsource
I search /usr/bin and do not find there is a dlb name "libsource",so i use apt-get to install libsource-highlight-so(no libsource for install),but it does not works
So where could i find this lib