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SNUGDOCK

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SNUGDOCK
#1

Hello,

I tried running snugdock on ROSIE. The run finished and when I downloaded the output files from the server, I got this messge in the output.json file:

 

{
  "cpu_usage": 0.7474999999999999, 
  "docked_proteins": [], 
  "essential": [
    "trigger-00000.prepack_trigger/proteins_prepacked.pdb", 
    "trigger-00001.snug_dock_trigger/score.sf"
  ], 
  "log": "\nCould not find essential file trigger-00000.prepack_trigger/proteins_prepacked.pdb in DB!\n", 
  "prepak.pdb": "output/trigger-00000.prepack_trigger/proteins_prepacked.pdb", 
  "score.sf": "output/trigger-00001.snug_dock_trigger/score.sf", 
  "status": 0
}

 

 

However, I do have a proteins.prepacked.pdb file in the  output\trigger-00000.prepack_trigger directory.

Can anyone help?

 

Thanks,

Adva

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Post Situation: 
Sun, 2017-07-16 00:46
adva

Which job number is this? (It helps if we can examine further details.)

Mon, 2017-07-17 07:57
rmoretti