I am trying to build glycans into a cryoEM density following the Meiler Lab tutorial here: http://www.meilerlab.org/jobs/downloadfile/name/Apr2019_glycan_modeling_talk.pdf
Using the provided XML file, I am able to run the job, but I see the following warning throughout the output file:
0mcore.scoring.electron_density.FastDensEnergy: ^[[0m^[[1m[ WARNING ]^[[0m Fold tree is not set properly for density scoring!
What does this warning mean? Will this have an impact on the results?
Category:
Post Situation:
Hello,
In order to use electron density the SetupForDensityScoring mover must be run first (ie the Add block must come first) and the "-mapfile {mymafile.mrc} " flags must be given.
That warning means that currently you are not using electron density in the simulations.