Dear developers,
I would like to make an ab initio model running Rosetta under a disulfide-bonding restraint.
I typed the following command line:
./rosetta.gcc -design -series aa -protein VHBX -chain _ -s VHBX.pdb -fix_disulf conss.txt -resfile res -ndruns 2000 pdbout test1>& log
I found the error message
Error score_disulf_cendist, tempdist = 0
> ERROR: Exit from:disulfides.cc line:3160
If any one of you can help me; please, tell me how to do it correctly.
With many thanks,
best regards,
Elin Teppa.
which version are you using? and what is the content in the conss.txt?
Looks like the disulf file does not correct.
> Dear developers,
> I would like to make an ab initio model running Rosetta under a disulfide-bonding restraint.
>
> I typed the following command line:
>
> ./rosetta.gcc -design -series aa -protein VHBX -chain _ -s VHBX.pdb -fix_disulf conss.txt -resfile res -ndruns 2000 pdbout test1>& log
>
> I found the error message
>
> Error score_disulf_cendist, tempdist = 0
> > ERROR: Exit from:disulfides.cc line:3160
>
> If any one of you can help me; please, tell me how to do it correctly.
>
> With many thanks,
> best regards,
> Elin Teppa.
I use Rosetta Version 2.3.0
Disulf file, conss.txt:
" 2 6\n"
" 3 7\n"
" 4 8\n"
" 5 9\n"
Thank you very much.