Hi, everyone, sorry for disturbing! I ran into a error when I ran rifgen program to generate RIF residues for Patchdock.
commands line: $RIFDOCK/build/apps/rosetta/rifgen @input/rifgen.flag > rifgen.log 2>&1
results:
core.init: Rosetta version: rosetta.binary.linux.release-171 r171 2018.09+release.333d996 333d99699777cd6a50d1c1736bacd689f8f1d1df https://www.rosettacommons.org 2018-02-27T09:57:00.705373
core.init: command: /home/zhengjishen/Desktop/rifdock/build/apps/rosetta/rifgen @input/rifgen.flag
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-1408011650 seed_offset=0 real_seed=-1408011650
core.init.random: RandomGenerator:init: Normal mode, seed=-1408011650 RG_type=mt19937
Rifdock thinks there are 16 threads.
rif_type: RotScore64
=================================================== preparing target ===================================================
core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 603 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 1.05729 seconds.
core.import_pose.import_pose: File 'input/target_ready.pdb' automatically determined to be of type PDB
core.conformation.Conformation: Found disulfide between residues 16 52
core.conformation.Conformation: current variant for 16 CYS
core.conformation.Conformation: current variant for 52 CYS
core.conformation.Conformation: current variant for 16 CYD
core.conformation.Conformation: current variant for 52 CYD
target nres: 66
target_res_file: 'input/rifgen_res.list'
target_res: [3, 4, 5, 6, 7, 8, 9, 11, 12, 13, 14]
centering target from 40.43616740186077 -11.12538158218002 16.86188050844751 to ( 0, 0, 0 )
Preparing rotamer index spec...
get_rotamer_index
core.pack.task: Packer task: initialize from command line()
core.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true.
core.pack.dunbrack.RotamerLibrary: shapovalov_lib::shap_dun10_smooth_level of 1( aka lowest_smooth ) got activated.
core.pack.dunbrack.RotamerLibrary: Binary rotamer library selected: /home/zhengjishen/Desktop/rosetta_bin_linux_2018.09.60072_bundle/main/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin
core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/home/zhengjishen/Desktop/rosetta_bin_linux_2018.09.60072_bundle/main/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin'.
core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.139926 seconds to load from binary
core.pack.task: Packer task: initialize from command line()
core.pack.task: Packer task: initialize from command line()
core.pack.task: Packer task: initialize from command line()
finish builidng rotamer_index now try fill rotamer index ...
start building rotamer index from fill rotamers
n_p_rots: 388
n_rots: 388
n_par_rots: 388
total num protonchi_parent_of_ 269
total num structural_parents_ 52
FAILED ASSERTION:
resname(ala_rot_) == "ALA"
EXIT FROM:
/home/zhengjishen/Desktop/rifdock/schemelib/scheme/chemical/RotamerIndex.hh line: 860
Hi, has your problem been solved? I got the same error as you. I consulted some people, they said that because of the gcc version, you need to compile and install rosetta and RIF with the gcc6.x version. I am trying, you can try it. I hope useful to you.