I'm trying to cluster some 50,000 de novo decoys, the initial sequence was about 60 aa long. But my lab's cluster's queueing app kills the job, and when I run it without the queuing app, it hogs the memory perceptibly.
(1) This happens when clustering both silent and pdb files.
(2) Apparently, Rosetta 2.3. clustering worked fine on the cluster... but, according to a co-worker, I can't cluster Rosetta 3.0 decoys with the Rosetta 2.3. application. (I am new to both, so I decided to learn 3.0 first.)
(3) The IT admin gave me this info on the cluster:
kernel: 188.8.131.52 SMP, i686, 32bit
Is this a bug, or a behaviour to be expected?