I am trying to install Rosetta 3.3 on a cluster, but every time I try to install it, I get a ton of warnings (but no actual errors). I was wondering if these warnings are something I should worry about and, if so, how I should fix them. Some examples of the warnings are below and I have attached the whole error file.
src/protocols/toolbox/pose_metric_calculators/RotamerBoltzCalculator.cc: In mem\
ber function 'protocols::moves::MinMoverOP protocols::toolbox::pose_metric_calc\
ulators::RotamerBoltzCalculator::init_minmover(core::pose::Pose&, core::Size, b\
ool, core::pack::task::PackerTaskOP)':
src/protocols/toolbox/pose_metric_calculators/RotamerBoltzCalculator.cc:160: wa\
rning: passing 'core::Real' for argument 1 to 'void core::kinematics::MoveMap::\
set_jump(int, bool)'
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
continues....
| Attachment | Size |
|---|---|
 rosetta_errors.txt | 50.74 KB |
The "skipping incompatible" warnings are ubiquitous and as far as I know harmless. I get pages and pages of them when I compile on a supercomputer cluster.
The other warning is indicative of someone's sloppy code but is not an error specific to you, it's just a warning of poorly written Rosetta code.
thanks so much, Its helpful to get some reassurance!