I would like to dock a short (12AA) peptide sequence to a few model inorganic surfaces.
It appears that similar simulations are being done by Jeff Gray's group with RosettaSurface, but its most recent implementation (and tutorial!) seem to be written for Rosetta 2.3...
A closer look at my installed version (3.4) reveals a surface_docking folder in /src/protocols/, but I cannot seem to find any corresponding executables.
Can anyone comment as to the availability and/or implementation of protein-surface docking in Rosetta 3.4?