I'm trying to incorporate D-amino acids in some designs.
I followed the steps as in the recent thread on D-amino acids here:
1) I uncommented the aminoacids I need in residue_types.txt
2) I downloaded and unpacked the params files
3) I use the -score:weights mm_std in my docking protocol
4) I found the 3 letter codes in fa_standard/residue_types/d-caa and modified the input file accordingly.
When I run low resolution docking now, what I get is the following error message:
can not find a residue type that matches the residue DSERat position 2
ERROR: core:util:switch_to_residue_type_set fails
ERROR: Exit from: src/core/util/SwitchResidueTypeSet.cc line: 143
Is there some step that is not mentioned in the above thread that I skipped,
to have the D-amino acids activated?
Thanks for help