I am using "minirosetta.linuxgccrelease" for homology modelling. It is recommended at least 1000 outputs are needed. However, after running 3 days, my PC got a problem and only ~500 outputs have been generated. If I run a second run, can I just run another 500 outputs and combine them together with the first batch outputs, and assume those 1000 outputs are generated from same batch?
To extend the question, for most of the time, can I always assume the outputs from different runs are from a same batch? (Of course, all the input files and command line remain identical)
Thank you very much.