I want to use ddg_monomer with multiple simultaneous mutations. According to the documentation (https://www.rosettacommons.org/docs/latest/ddg-monomer.html) this requires a mutation file, instead of the resfile used by other applications.
However, in the example provided by the documentation, there is no use of a chain ID. My structure has multiple chains.
How can I specify a chain ID in the mutation file?
If this is not possible, how do I know what residue number I have to put in the mutation file, when all I know is the chain ID and the residue number inside the chain?