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Fragment File Reading problem

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Fragment File Reading problem

I am trying to use the fragment file generated in the Robetta we site, to build a model for my protein. I am following the instructions in the tutorial, and I checekd that the file I am using sees just like the one used on the tutorial (test_in3_fragments). So everything seems ok. However, pyrosetta is not able to read my fragment file, I guess, since it comes out a reading "line too short, unable to read fragment"....all lines like that, and in the end it says "o fragments read". I try anyhow to generate a pdb and it comes out something that seems good, but when I try to visualize is a mess of atoms.
What can be wrong? I am just following basic instructions...

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Tue, 2012-06-12 13:42

Your original question says you've checked all the obvious things, mostly making sure that your Robetta fragments match the regular fragment file format. Does test_in3_fragments, or whatever code you are using, correctly load the sample fragment file you are comparing to?

Sun, 2012-06-24 14:09