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Generate full symmetric assembly from subsystem

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Generate full symmetric assembly from subsystem
#1

Hi,

I was just wondering if it's possible to generate the full symmetric assembly from a modeled subsystem in symmetrical docking using Rosetta 3?

Thanks...

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Thu, 2011-04-28 20:04
lj269

You can analyze the pdb with the make_symmdef_file.pl script. The script will generate a pdb with all subunits in the system (*_symm.pdb). If you allow subunits to be generated at sufficiently large distances from the expanding subunit you should be able to get the whole thing (look at the -r flag).

Fri, 2011-04-29 07:03
IAndre