I have attempted to run fold and dock on a protein (see an alternate post on this board for details) with C4 symmetry defined but but when I run:
/home/chxcja/rosetta3.3_bundles/rosetta_source/bin/score.linuxgccrelease -database ~/rosetta3.3_bundles/rosetta_database/ -in:file:silent default-c4membrane.out -in::file::fullatom -out:output
to get a pdb file of the models the pdbs only contain 1 chain.
Does anyone have any ideas how I can get the pdb of the complex (in this case a C4 symmetric structure).
Thanks for your help