I wonder if there is a way to trigger the optimization of polar hydrogens in PyRosetta just like the "-no_optH" option in Rosetta when reading structure information from PDB files into Pose. Because I found many potential hydrogen bonds in the original PDB structures were interrupted by the wrongly added hydrogens by default which result very high energy scores.
I have not found any routines to set free the movemenet of hydrogens in the MoveMap settings.
And by the way, is there a way to supress the std outputs like "core" and "basic" in PyRosetta, just like the "-mute" or "-output:level" options in Rosetta? Because the debug outputs of my scripts are always flooded by them...