You are here

How to pop off terminus variants

3 posts / 0 new
Last post
How to pop off terminus variants


I read a single-residue pose stored in pdb file with "pose_from_pdb". Rosetta automatically added the terminus (OXT and two hydrogen atoms). Is there any way to prevent terminus adding or popping them off after reading in?


Post Situation: 
Mon, 2012-09-03 03:12

It is not possible to prevent them from being read in. It should be fairly straightforward to remove them. I believe the function name is something like core::chemical::util::remove_terminus_variant_from_pose_residue. If you can't find it let me know and I'll go look again and find out for sure.

Mon, 2012-09-03 05:46

Thanks Steve, I found it and it works well as you described.

Mon, 2012-09-03 08:34