I would like to use a specific library for design using new distributions of P (Res | phi, psi). I found 7 files in the rosetta_database directory that seem to be exactly what I'm looking for: Paa, P_AA, Paa_n, P_AA_n, Paa_pp, P_AA_pp, P_AA_pp_08.2009
Our lab is in the process of becoming a Rosetta developer officially once again, but that will take some time.
First, can anyone point me in the right direction as to the format of each of these files/how each of them are used?. Some, like P_AA seem fairly obvious, but some of the others I have no idea.
Second, are these all the files I would have to edit, or are there more?
Any help would be appreciated. Thanks!