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problem when exact pdb from silent file

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problem when exact pdb from silent file

Hi all,
I got a problem when I tried extracting pdb from silent file in the tutorial in Abinitio Modeling ( Actually I got nothing when I tried that command to exact pdb out. And there is no error message coming out, which I thought is very strange.


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Mon, 2011-04-18 00:42

I've already solved the problem but I want to report the several opinions that are used in the manual are wrong:
The original one is:
./bin/score.linuxgccrelease \
-database ../rosetta_database \
-in:file:silent 1l2y_silent.out \
-in:file:fullatom \
-output \

but the opinion "-output" should be "-out:output", or you may also want add opinion "-out:pdb".

Tue, 2011-04-19 05:58