wanting to use the membrane abinitio application, I'd really like to know how the "Mlipo" score is calculated. I assume also using the .lips4 file as input? And is the .lips4 file used for anything else? I could not find this piece of information in the manual/forum and also not in the paper describing the membrane low-res. application (Proteins 2006, 62:1010).
I would like to make systematic changes to the .lips4 file before the structure prediction, therefore this is a very important piece of information for me and I would greatly apreciate any help/hints or literature that I overlooked :)