1) I have recently started using Rosetta Scripts and would like to know if there is a way to model a loop while optimizing chi angles of only selected residues. I remember you had previously alluded to TaskAwareMinMover - is that the route - if so how ? I am using the following XML file:
2) Finally, assuming a protein that is "nres" residues long, is it possible to use Rosetta Scripts to remodel only the last five residues, i.e. "nres-4" - "nres".