Getting Started

Build Documentation

Rosetta Tutorials

Rosetta Basics

Rosetta Applications

• Structure Prediction

• Design

• Docking

• Analysis

• Utilities

• Antibody-specific applications

• RNA-specific applications

• Tools

• Full apps list

Rosetta Scripting Interfaces

Development Documentation

Internal Documentation

How to Write Documentation

FAQ

Glossary

RosettaEncyclopedia

Options list

Metadata

Author: Steven Lewis (smlewi@gmail.com)

This document was originally written 4 Jan 2012 by Steven Lewis. This document was last updated 4 Jan 2012 by Steven Lewis.

NOTE: I didn't write any part of this server. Harass the Gray lab to flesh out this document.

Application purpose

Jeff Gray's lab wrote an awesome tool to let you watch live Rosetta trajectories in PyMOL. It's like the graphics viewer but even awesomer.

How to use it

1. Open pymol
2. run /path/to/rosetta/src/python/bindings/PyMOLPyRosettaServer.py
3. Start a Rosetta run with the flag -show_simulation_in_pymol X, where X is how many seconds pass between PyMOL updates. 5 is default; low values may overload your computer.

See Also

• Utility applications: other utility applications
• Application Documentation: Application documentation home page
• Running Rosetta with options: Instructions for running Rosetta executables.