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Docking Initial Perturbation

This mover carries out the initial perturbation phase of the RosettaDock algorithm. This contains the functions that create initial positions for docking. You can either randomize partner 1 or partner 2, spin partner 2, or perform a simple perturbation.

Most of these options are also described here.

<DockingInitialPerturbation randomize1="(bool)" randomize2="(bool)" use_ellipsoidal_randomization="(bool)" dock_pert="(bool,"false")" trans="(real)" rot="(real)" uniform_trans="(real)" spin="(bool)" center_at_interface="(bool)" slide="(bool)" name="(string)"/>
Option Description
randomize1 Randomize the first docking partner
randomize2 Randomize the second docking partner
use_ellipsoidal_randomization Use the EllipsoidalRandomizationMover instead of the RigidBodyRandomizeMover
dock_pert Read in translational and rotational perturbations and apply to pose (default is false)
trans Translational perturbation to apply before docking (requires dock_pert="true")
rot Rotational perturbation to apply before docking (requires dock_pert="true")
uniform_trans Use the UniformSphereTransMover
spin Spin partner about its axis
center_at_interface Center the spin at the interface
slide Slide docking partners into contact

See Also