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Add ResidueTypeLinkingConstraints to the pose such that a symmetric sequence (CATCATCAT) will be favored during design. You should add this mover before sequence design is performed.

<FavorSymmetricSequence penalty="(&real)" name="symmetry_constraints" symmetric_units="(&size)"/> 
  • penalty should be a positive Real number and represents the penalty applied to a pair of asymmetric residues.
  • symmetric_units should be a positive Integer representing the number of symmetric units in the sequence. It should be a value of 2 or greater

The total constraint score is listed as 'res_type_linking_constraint'

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