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Convert a pose into fullatom mode in preparation for high-resolution loop modeling. This is used internally by LoopModeler.

<PrepareForFullatom name="(&string)" force_repack="(no &bool)" scorefxn="(&string)"/>


  • force_repack: By default, only sidechains that are part of the loop and sidechains that couldn't be recovered from the input structure are repacked when converting to fullatom mode. If the input pose is already in fullatom mode, most positions may be left unchanged. Enabling this option forces the entire protein to be repacked regardless.

  • scorefxn: The name of the score function to use for repacking. Required.

See Also