RBOutMover

Table of Contents

Author

Gideon Lapidoth; glapidoth@gmail.com; Christopher Norn; ch.norn@gmail.com ;PI: Sarel J. Fleishman; sarel@weizmann.ac.il

Overview

Brief

This mover is used to build a database of jump coordinates between the variable light and variable heavy chains of antibodies. The jump coordinate database is then later used during antibody modeling (ABpredict) and antibody design (ABdesign) to sample different Vl/Vh orientaions. The template PDB should be the same PDB used to build the SpliceOutAntibody coordinate database. The input PDB (-s) is the one used to copy the jump coordinates from.

<RBOut name="(&string;)" template_fname="(&string;)" jump_dbase_fname="(&string;)" jump_from_foldtree="(false &bool;)" />

template_fname: The reference PDB file used to build the database
jump_dbase_fname: jump coordinate database file
jump_from_foldtree: If true get jump from fold tree and not automatically from the pose chain break (dflt)

Example

Currently, this mover is only accessible via RosettaScripts. An example RosettaScripts tag is below:

<RBOut name="rbo" template_fname="template.pdb" jump_dbase_fname="test.db" jump_from_foldtree="0" />