scripting_documentation/RosettaScripts/xsd/to_RestrictConservedLowDdg

Autogenerated Tag Syntax Documentation:

XRW TO DO

<RestrictConservedLowDdg name="(&string;)" use_occurrence_data="(true &bool;)"
        restrict_to_repacking="(true &bool;)"
        convert_scores_to_probabilities="(true &bool;)" filename="(&string;)"
        min_aa_probability="(&real;)" keep_native="(&bool;)"
        chain_num="(1 &non_negative_integer;)"
        probability_larger_than_current="(&bool;)"
        ignore_pose_profile_length_mismatch="(&bool;)" debug="(false &bool;)"
        conservation_cutoff_aligned_segments="(&real;)"
        conservation_cutoff_protein_interface_design="(&real;)"
        ddG_filename="(&string;)" conservation_cutoff="(&real;)"
        ddG_cutoff="(&real;)" verbose="(&bool;)" >
    <ProteinInterfaceDesign name="(&string;)"
            repack_chain1="(1 &non_negative_integer;)"
            repack_chain2="(1 &non_negative_integer;)"
            design_chain1="(0 &non_negative_integer;)"
            design_chain2="(1 &non_negative_integer;)"
            allow_all_aas="(0 &non_negative_integer;)"
            design_all_aas="(0 &non_negative_integer;)"
            jump="(1 &non_negative_integer;)"
            interface_distance_cutoff="(8.0 &real;)"
            modify_before_jump="(true &bool;)" modify_after_jump="(true &bool;)" />
    <RestrictToAlignedSegments name="(&string;)" source_pdb="(&string;)"
            start_res="(&string;)" stop_res="(&string;)"
            chain="(1 &non_negative_integer;)" repack_shell="(6.0 &real;)" >
        <AlignedSegment name="(&string;)" source_pdb="(&string;)" start_res="(&string;)"
                stop_res="(&string;)" />
    </RestrictToAlignedSegments>
</RestrictConservedLowDdg>

use_occurrence_data: Should we restrict positions to mutations that have occurrence larger than zero
restrict_to_repacking: XRW TO DO
convert_scores_to_probabilities: XRW TO DO
filename: XRW TO DO
min_aa_probability: XRW TO DO
keep_native: XRW TO DO
chain_num: XRW TO DO
probability_larger_than_current: XRW TO DO
ignore_pose_profile_length_mismatch: XRW TO DO
debug: XRW TO DO
conservation_cutoff_aligned_segments: XRW TO DO
conservation_cutoff_protein_interface_design: XRW TO DO
ddG_filename: XRW TO DO
conservation_cutoff: XRW TO DO
ddG_cutoff: XRW TO DO
verbose: XRW TO DO

Subtag ProteinInterfaceDesign: Restricts to the task that is the basis for protein-interface design.

repack_chain1: first chain to repack
repack_chain2: 2ndchain to repack
design_chain1: first chain to design
design_chain2: 2nd chain to design
allow_all_aas: allow all amino acid types for design. default: do not design to G/C/P
design_all_aas: design all amino acids. default: do not design G/C/P
jump: residue with the jump
interface_distance_cutoff: Cbeta distance of chain where design/repack is allowed on other chain
modify_before_jump: change residues before the jump. For instance, if you want set repack on chain2 interfacial residues to true, and the rest of chain2 to false, and yet not change the task for chain1, then use this taskoperation with modify_before_jump=0
modify_after_jump: change residues after the jump

Subtag RestrictToAlignedSegments: XRW TO DO

source_pdb: XRW TO DO
start_res: XRW TO DO
stop_res: XRW TO DO
chain: XRW TO DO
repack_shell: XRW TO DO

Subtag AlignedSegment: XRW TO DO

source_pdb: XRW TO DO
start_res: XRW TO DO
stop_res: XRW TO DO

scripting_documentation/RosettaScripts/xsd/to_RestrictConservedLowDdg_type