scripting_documentation/RosettaScripts/xsd/to_RestrictDesignToProteinDNAInterface

Autogenerated Tag Syntax Documentation:

Restrict Design and repacking to protein residues around the defined DNA bases

<RestrictDesignToProteinDNAInterface name="(&string;)" dna_defs="(&string;)"
        base_only="(&bool;)" z_cutoff="(&real;)" close_threshold="(&real;)"
        contact_threshold="(&real;)" forget_chains_and_interface="(&bool;)" />

dna_defs: dna positions to design around, separated by comma (e.g. C.405.THY,C.406.GUA). The definitions should refer only to one DNA chain, the complementary bases are automatically retrieved. Bases are ADE, CYT, GUA, THY. The base (and its complementary) in the starting structure will be mutated according to the definition, if not prevented from another task operation.
base_only: only residues within reach of the DNA bases are considered
z_cutoff: limit the protein interface positions to the ones that have a projection of their distance vector on DNA axis lower than this threshold. It prevents designs that are too far away along the helical axis
close_threshold: C-Beta (except Glycine) to baes atom-atom distance threshold not including ribose or phosphate backbone. Used to determine residues close to DNA
contact_threshold: Threshold of contacting residues with DNA
forget_chains_and_interface: Abandon existing dna chains and interface info to prevent accumulation of state

scripting_documentation/RosettaScripts/xsd/to_RestrictDesignToProteinDNAInterface_type