Autogenerated Tag Syntax Documentation:


Author: Jared Adolf-Bryfogle (jadolfbr@gmail.com) Restrict (design and/or packing) to specific CDRs and neighbors

<RestrictToCDRsAndNeighbors name="(&string;)" cdrs="(&string;)"
        neighbor_dis="(6.0 &real;)" design_cdrs="(false &bool;)"
        design_antigen="(false &bool;)" design_framework="(false &bool;)"
        stem_size="(0 &non_negative_integer;)" cdr_definition="(&string;)"
        input_ab_scheme="(&string;)" />
  • cdrs: List of CDR regions (string) devided by one of the following characters: ":,'`~+*|;. "Recognized CDRs: "Aroop|Chothia|Kabat|Martin|North|"
  • neighbor_dis: Neighbor detection distance
  • design_cdrs: Should we allow design to the CDRs?
  • design_antigen: Shoule we allow design to neighboring antigen residues?
  • design_framework: Shoule we allow design to neighboring framework residues?
  • stem_size: Length of the stem to also select
  • cdr_definition: The Specific CDR definition to use.
  • input_ab_scheme: The Sepcific input antibody scheme to use