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PyRosetta - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 01:38
1
22,824 by Sergey
Fri, 2015-09-04 16:14
Normal topic Segmentation fault encountered using Interface
by WenyuanW » Tue, 2024-04-02 13:41
0
123 by WenyuanW
Tue, 2024-04-02 13:41
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29
0
2,984 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
2,211 by xfliu
Mon, 2014-04-21 06:47
Normal topic Frequently Asked Questions
by sid » Fri, 2009-10-02 09:00
0
2,313 by sid
Mon, 2014-04-21 06:47
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
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2,228 by ast
Mon, 2014-04-21 06:47
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
1,308 by matteoferla
Sun, 2020-03-01 02:38
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
2,083 by MarkW
Sun, 2015-02-08 14:14
Normal topic Architecture question
by jwillis » Thu, 2010-02-25 09:43
0
1,882 by jwillis
Mon, 2014-04-21 06:47
Normal topic Question Regarding Usage of Specific Rosetta Tools in PyRosetta
by jurkm » Thu, 2010-07-22 23:54
0
1,728 by jurkm
Mon, 2014-04-21 06:47
Normal topic Structure not changing after pose.set_phi
by publicclass » Thu, 2020-11-05 09:34
0
1,194 by publicclass
Thu, 2020-11-05 09:34
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
1,313 by nleroy
Mon, 2019-07-22 07:51
Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
2,117 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic How to fold-and-dock in PyRosetta?
by sarah_b » Thu, 2020-05-14 02:37
0
1,329 by sarah_b
Thu, 2020-05-14 02:37
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,952 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Segfault when loading scorefxn() and load_from_pdb()
by mm » Wed, 2020-07-22 03:00
0
1,092 by mm
Wed, 2020-07-22 03:02
Normal topic DockingSlideIntoContact does not work
by batch2k » Wed, 2010-02-17 05:57
0
1,717 by batch2k
Mon, 2014-04-21 06:47
Normal topic trRosetta modelling with a ligand
by ShiranBZ » Tue, 2020-08-25 01:44
0
1,498 by ShiranBZ
Tue, 2020-08-25 01:44
Normal topic dump_pdb problems
by srballard » Fri, 2010-05-28 14:04
0
2,209 by srballard
Mon, 2014-04-21 06:47
Normal topic Announcements
by sid » Fri, 2009-10-02 08:54
0
1,737 by sid
Mon, 2014-04-21 06:47
Normal topic small molecule docking
by sharang » Mon, 2010-08-02 14:57
0
1,917 by sharang
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,804 by Sergey
Mon, 2014-04-21 06:47
Normal topic Collect data about the modelling
by Roberto » Thu, 2022-01-06 01:43
0
783 by Roberto
Thu, 2022-01-06 01:43
Normal topic Updating Coords
by jadolfbr » Sat, 2010-01-30 10:33
0
2,009 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,661 by Victor
Mon, 2014-04-21 06:47
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
1,617 by sylvia
Mon, 2014-04-21 06:47
Normal topic rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working
by tschiex » Sun, 2017-11-05 08:29
0
1,379 by tschiex
Sun, 2017-11-05 08:29
Normal topic Best way to store a pose by Pyrosetta for Pyrosetta
by matteoferla » Wed, 2021-04-07 06:50
0
2,263 by matteoferla
Wed, 2021-04-07 06:50
Normal topic WindowsError: [Error 32]
by jetu20 » Sun, 2020-10-11 21:02
0
1,129 by jetu20
Sun, 2020-10-11 21:02
Normal topic Affinity optimization with GreedyOptMutationMover
by wentlewi » Thu, 2020-05-07 08:29
0
1,216 by wentlewi
Thu, 2020-05-07 12:33
Normal topic Minimizing a Symmetric Structure
by ammar.x.gilani » Wed, 2023-08-02 11:10
0
389 by ammar.x.gilani
Wed, 2023-08-02 11:10
Normal topic Suggestion: setting Sphinx documentation to not skip __init__
by matteoferla » Mon, 2020-08-24 09:02
0
1,736 by matteoferla
Mon, 2020-08-24 09:02
Normal topic Distance constraints for amino acids pairs
by blubbi » Tue, 2010-05-18 05:39
0
1,891 by blubbi
Mon, 2014-04-21 06:47
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,890 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
2,999 by ajasja
Wed, 2014-09-24 08:57
Normal topic Set torsions for atoms in different residues
by mluengo » Fri, 2023-05-12 03:07
0
439 by mluengo
Fri, 2023-05-12 03:07
Normal topic Python3.8 release for Mac download is a dead link
by noahC_noahDo » Fri, 2020-06-26 18:20
0
1,145 by noahC_noahDo
Fri, 2020-06-26 18:20
Normal topic PyRosetta v1.1
by jadolfbr » Tue, 2010-02-09 08:02
0
1,649 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How can I insert my variable length fragmrnts library into pyrosetta?
by michelleqyh » Tue, 2020-08-04 07:26
0
1,003 by michelleqyh
Tue, 2020-08-04 07:26
Normal topic building a 77 amino acid long fragment
by tevang » Fri, 2010-02-19 06:37
0
1,750 by tevang
Mon, 2014-04-21 06:47
Normal topic analysis utilities for trajectories
by cbala » Mon, 2010-06-14 02:58
0
1,827 by cbala
Mon, 2014-04-21 06:47
Normal topic residue selection / secondary structure constraints
by sharang » Thu, 2010-08-05 10:16
0
1,860 by sharang
Mon, 2014-04-21 06:47
Normal topic cleanATOM() for non-ideal amino acids
by ac.research » Thu, 2018-03-29 07:50
0
1,461 by ac.research
Thu, 2018-03-29 07:50
Normal topic Compile C++ Rosetta to Pyrosetta
by michelleqyh » Fri, 2020-08-21 08:44
0
1,153 by michelleqyh
Fri, 2020-08-21 08:44
Normal topic Gunn fragment insertion
by jadolfbr » Sun, 2010-02-28 09:39
0
1,770 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58
0
1,884 by Sergey
Mon, 2014-04-21 06:47
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,833 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Symmetry breaks due to small structure gaps
by dbiedermann » Mon, 2021-09-20 17:39
0
890 by dbiedermann
Mon, 2021-09-20 17:40
Normal topic How to tell where and what fragment or rotamer was inserted?
by charlie.strauss » Wed, 2010-01-27 10:36
0
1,768 by charlie.strauss
Mon, 2014-04-21 06:47
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
1,970 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
1,865 by rmoretti
Fri, 2017-12-01 10:25
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
2,127 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
1,917 by rmoretti
Sat, 2017-12-16 10:47
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25
1
2,646 by smlewis
Mon, 2014-04-21 06:48
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
1,764 by smlewis
Tue, 2020-09-29 12:00
Normal topic undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)
by embl-structures » Thu, 2010-08-05 05:02
1
21,595 by embl-structures
Mon, 2014-04-21 06:47
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
2,926 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
1,813 by rmoretti
Tue, 2019-07-09 09:42
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25
1
2,745 by Sergey
Mon, 2014-04-21 06:47
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
2,337 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
3,024 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
1,498 by matteoferla
Wed, 2020-12-02 13:49
Normal topic Fundamental methods: pose.residue().total_atom(), pose.atom(#) ?
by msellers » Mon, 2010-11-01 10:53
1
2,715 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
2,279 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
2,189 by rmoretti
Sat, 2018-06-30 02:37
Normal topic "corrupted" small molecules. aromatic rings get distortet during relax
by patcD » Thu, 2022-07-21 04:51
1
3,351 by rmoretti
Thu, 2022-07-21 07:14
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
2,096 by ralford
Wed, 2018-12-19 03:20
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
2,172 by Labonte
Thu, 2016-10-06 14:05
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
3,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
1,809 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
1,443 by matteoferla
Sat, 2021-04-10 07:18
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36
1
3,458 by smlewis
Mon, 2014-04-21 06:47
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
2,538 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
2,770 by Sergey
Thu, 2014-08-14 11:54
Normal topic Molfile to params creating invalid params output
by edan » Sun, 2021-08-29 01:54
1
1,412 by tsztain
Sun, 2021-08-29 11:15
Normal topic Atom mapping in RMSD functions
by gkell » Tue, 2022-02-15 15:48
1
1,300 by rmoretti
Fri, 2022-02-18 10:23
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38
1
4,110 by msellers
Mon, 2014-04-21 06:47
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
2,303 by rmoretti
Mon, 2016-09-05 10:35
Normal topic What is the meaning of "JUMP" in rigid.RigidBodyTransMover(pose,JUMP)?
by lanselibai » Sat, 2023-10-28 09:49
1
625 by rmoretti
Mon, 2023-10-30 08:43
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
2,054 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
1,810 by matteoferla
Tue, 2021-03-30 08:20
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
2,784 by linucks
Mon, 2014-04-21 06:47
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
2,126 by Sergey
Tue, 2017-01-31 13:42
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
2,561 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to realize a free bb design? PackMover=fixed bb!
by ast » Wed, 2011-08-31 09:41
1
3,656 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Hydrogen Bonding Distances and Atom identification
by kmolloy717 » Fri, 2021-06-25 08:15
1
1,639 by matteoferla
Wed, 2021-06-30 09:02
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
4,710 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
3,055 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
5,906 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
2,485 by smlewis
Mon, 2014-04-21 06:47
Normal topic Boost.Python C++/PyRosetta interop
by gipsonb » Wed, 2010-10-06 15:15
1
2,803 by gipsonb
Mon, 2014-04-21 06:47
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
2,641 by rmoretti
Mon, 2022-06-06 12:35
Normal topic Units of kT for MC mover
by msellers » Fri, 2010-12-10 05:40
1
3,965 by smlewis
Mon, 2014-04-21 06:47
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
2,299 by rmoretti
Thu, 2019-05-09 15:56
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
7,346 by weitzner
Mon, 2014-04-21 06:47
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34
1
3,359 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
2,653 by rmoretti
Mon, 2019-06-24 12:54
Normal topic installing PyRosetta on non-Intel-based Mac platform
by sid » Tue, 2009-10-06 09:07
1
2,339 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
2,266 by rmoretti
Tue, 2014-08-12 08:35
Normal topic generate_nonstandard_residue_set() takes exactly 2 arguments (1given)
by yanghaobjordan » Mon, 2018-01-29 18:59
1
2,531 by rmoretti
Tue, 2018-01-30 06:29

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