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PyRosetta - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
997 by rmoretti
Fri, 2017-12-01 10:25
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
1,914 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
789 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
807 by rmoretti
Thu, 2019-05-09 14:32
Normal topic how do I compile the python bindings for rosetta3 for python2.5 linux x86_64
by tru » Wed, 2009-11-25 11:38
1
1,583 by luki
Mon, 2014-04-21 06:47
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
1,861 by smlewis
Mon, 2014-04-21 06:47
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
1,006 by rmoretti
Sat, 2017-12-16 10:47
Normal topic How to call SnugDock from PyRosetta
by SenyorDrew » Tue, 2016-06-21 07:28
1
1,397 by jeliazkov
Fri, 2016-07-01 08:42
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
1,773 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
2,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
668 by rmoretti
Tue, 2019-07-09 09:42
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
1,727 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
1,070 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
373 by smlewis
Tue, 2020-09-29 12:00
Normal topic Glycan minimization
by seanle24245 » Thu, 2016-10-06 13:51
1
1,308 by Labonte
Thu, 2016-10-06 14:05
Normal topic [Solved]NameError
by nunesjulioc » Fri, 2010-02-05 08:26
1
1,541 by AlexI
Mon, 2014-04-21 06:47
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
1,082 by rmoretti
Sat, 2018-06-30 02:37
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
283 by matteoferla
Wed, 2020-12-02 13:49
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
1,828 by Sergey
Thu, 2014-08-14 11:54
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,611 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
912 by ralford
Wed, 2018-12-19 03:20
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
985 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Pyrosetta score protein structures with missing atoms in sidechain
by xuezhi » Fri, 2021-04-09 13:33
1
126 by matteoferla
Sat, 2021-04-10 07:18
Normal topic undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)
by embl-structures » Thu, 2010-08-05 05:02
1
19,132 by embl-structures
Mon, 2014-04-21 06:47
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
774 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Convert Rotamer Vector to Chi Angles
by L-Allanine » Sat, 2016-07-30 09:16
1
1,405 by rmoretti
Mon, 2016-09-05 10:35
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
1,851 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Fundamental methods: pose.residue().total_atom(), pose.atom(#) ?
by msellers » Mon, 2010-11-01 10:53
1
1,680 by smlewis
Mon, 2014-04-21 06:47
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
1,320 by Sergey
Tue, 2017-01-31 13:42
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
1,666 by Sergey
Mon, 2014-04-21 06:47
Normal topic Docking between peptide and lipid-biayer
by sprinkle166 » Thu, 2017-10-26 08:35
1
1,137 by rmoretti
Fri, 2017-12-01 10:34
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
1
167 by matteoferla
Tue, 2021-03-30 08:20
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36
1
2,667 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,767 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
1,857 by smlewis
Mon, 2014-04-21 06:47
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
2,010 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38
1
3,015 by msellers
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
1,783 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
1,836 by Labonte
Mon, 2014-09-08 09:13
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
1,494 by rmoretti
Tue, 2014-08-12 08:35
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
3,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
1,855 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic Getting interface residues?
by JuliusSu » Wed, 2014-04-16 21:58
2
1,935 by JuliusSu
Thu, 2014-04-17 18:34
Normal topic eval_ci_2b() with hydrogen bonds
by TensorDuck » Fri, 2018-03-30 14:05
2
1,536 by TensorDuck
Mon, 2018-04-02 13:41
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,846 by Sergey
Thu, 2017-08-31 04:39
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00
2
2,716 by msellers
Mon, 2014-04-21 06:47
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,836 by ajasja
Fri, 2014-08-22 08:32
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
3,279 by cno
Mon, 2014-04-21 06:47
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
1,682 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Protocol for adding/mutating non-canonical AA
by joeri » Thu, 2021-03-25 08:14
2
182 by vmulligan
Mon, 2021-03-29 10:39
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
3,501 by rmoretti
Fri, 2016-06-17 09:25
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
1,559 by yijietseng
Tue, 2019-05-07 11:02
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
990 by tfobe
Mon, 2019-05-20 16:05
Normal topic pyrosetta die slow
by Eden » Sun, 2021-06-13 00:05
2
63 by Eden
Mon, 2021-06-14 23:10
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55
2
2,693 by astrofunk
Mon, 2014-04-21 06:47
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
1,111 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18
2
2,766 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,510 by Sergey
Mon, 2014-04-21 06:48
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
950 by rmoretti
Wed, 2019-09-18 14:24
Normal topic [Solved] PyRosetta segmentation fault in Linux
by AlexI » Wed, 2010-02-03 22:59
2
3,200 by AlexI
Mon, 2014-04-21 06:47
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
2,817 by ajasja
Sat, 2014-06-21 11:57
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
414 by matteoferla
Fri, 2020-11-20 07:47
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
1,885 by ac.research
Fri, 2017-06-30 05:44
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
2,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
1,793 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
2,530 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
1,364 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
3,150 by rmoretti
Mon, 2014-10-06 15:10
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
2,267 by protos_heis
Fri, 2015-02-27 13:38
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
883 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Assesing the docking
by nasim.soltani58 » Sat, 2020-12-05 21:19
2
383 by nasim.soltani58
Tue, 2020-12-08 22:44
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
2,996 by Stefan
Mon, 2014-04-21 06:47
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,774 by lah435
Mon, 2014-04-21 06:47
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
1,709 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic How to relax glycans after glycosylating sites on a pose?
by sdtruong » Mon, 2021-03-22 09:44
2
146 by sdtruong
Mon, 2021-03-22 17:05
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
596 by matteoferla
Fri, 2020-10-09 05:20
Normal topic installing PyRosetta on Mac OSX 10.6 and Linux in VMWare
by sid » Tue, 2009-10-06 09:04
2
2,992 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
2,005 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic FastRelax results in bad structure
by Eden » Mon, 2021-04-26 08:39
2
181 by Eden
Sun, 2021-06-13 00:14
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
2,390 by ajasja
Thu, 2014-10-30 08:32
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
969 by yijietseng
Fri, 2019-05-31 12:21
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
1,939 by drluca77
Mon, 2014-04-21 06:47
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
2,101 by Sergey
Mon, 2014-04-21 06:47
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
1,858 by ac.research
Thu, 2017-07-06 11:09
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,472 by parmef
Sat, 2017-06-24 03:18
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,891 by lah435
Mon, 2014-08-18 17:23
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18
2
1,589 by MNP1986
Tue, 2018-07-31 23:50
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,642 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,447 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25
2
3,492 by SunH
Mon, 2014-04-21 06:47
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,311 by ajasja
Thu, 2014-07-03 05:36
Normal topic Where can I found the dictory of all function of Pyrosetta?
by sprinkle166 » Mon, 2017-10-16 13:58
2
1,508 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic Individual Residue Energy
by Peik » Fri, 2021-02-19 10:13
2
262 by Peik
Fri, 2021-02-19 10:30
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
1,869 by ajasja
Mon, 2014-09-22 09:53
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
1,859 by sid
Mon, 2014-04-21 06:47
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
2,448 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
2,747 by weitzner
Mon, 2014-04-21 06:47
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
2,151 by xfliu
Mon, 2014-04-21 06:47
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
2,159 by AlexI
Mon, 2014-04-21 06:47
Normal topic Failure appending a residue
by rfschleif » Thu, 2011-06-16 10:53
2
2,758 by smlewis
Mon, 2014-04-21 06:47
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