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PyRosetta - General

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Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
1,157 by Sergey
Tue, 2017-01-31 13:42
Normal topic how do I compile the python bindings for rosetta3 for python2.5 linux x86_64
by tru » Wed, 2009-11-25 11:38
1
1,431 by luki
Mon, 2014-04-21 06:47
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
1,979 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
2,018 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
351 by matteoferla
Thu, 2020-04-30 12:04
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
881 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,553 by rmoretti
Mon, 2015-10-19 08:25
Normal topic [Solved]NameError
by nunesjulioc » Fri, 2010-02-05 08:26
1
1,350 by AlexI
Mon, 2014-04-21 06:47
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
1,611 by rmoretti
Sat, 2017-12-09 01:50
Normal topic undefined symbol: PyUnicodeUCS4_FromEncodedObject (from libboost_python-mt-py26.so.1.38.0)
by embl-structures » Thu, 2010-08-05 05:02
1
18,562 by embl-structures
Mon, 2014-04-21 06:47
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
1,353 by rmoretti
Mon, 2017-09-04 09:52
Normal topic Fundamental methods: pose.residue().total_atom(), pose.atom(#) ?
by msellers » Mon, 2010-11-01 10:53
1
1,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06
1
275 by matteoferla
Wed, 2020-07-01 05:30
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
1,341 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
1,860 by linucks
Mon, 2014-04-21 06:47
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
1,823 by rmoretti
Wed, 2014-09-17 07:29
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
3,205 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Adding Custom AtomTypes to Pyrosetta
by garrettameek » Wed, 2019-03-13 15:06
1
571 by rmoretti
Thu, 2019-05-09 15:06
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
1,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determine residues where Backrub Mover is applied
by jferrie » Fri, 2017-10-27 08:19
1
798 by rmoretti
Fri, 2017-12-01 10:25
Normal topic how to realize a free bb design? PackMover=fixed bb!
by ast » Wed, 2011-08-31 09:41
1
2,587 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
4,600 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
571 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
742 by rmoretti
Sat, 2017-12-16 10:47
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36
1
2,520 by smlewis
Mon, 2014-04-21 06:47
Normal topic "Server Could Not Be Reached" although I have an Internet connection
by epi89 » Mon, 2020-09-28 21:32
1
139 by smlewis
Tue, 2020-09-29 12:00
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
1,461 by rmoretti
Fri, 2015-04-24 13:17
Normal topic Score bonus to hbond
by yijietseng » Fri, 2019-07-05 12:28
1
469 by rmoretti
Tue, 2019-07-09 09:42
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
832 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Extending Pyrosetta toturials for docking by adding constraints
by nasim.soltani58 » Thu, 2020-11-26 13:16
1
22 by matteoferla
Wed, 2020-12-02 13:49
Normal topic GenericMonteCarloMover accept/reject moves
by ac.research » Fri, 2018-06-08 06:04
1
808 by rmoretti
Sat, 2018-06-30 02:37
Normal topic Changing the membrane Thickness (THKN)
by jlapin » Mon, 2018-11-12 06:32
1
689 by ralford
Wed, 2018-12-19 03:20
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38
1
2,829 by msellers
Mon, 2014-04-21 06:47
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
1,830 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
782 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Beta-Hairpin Design
by bharat_46010 » Wed, 2014-02-12 23:18
2
2,502 by bharat_46010
Thu, 2014-02-13 16:00
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,902 by Sergey
Mon, 2014-04-21 06:47
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
2,592 by ajasja
Sat, 2014-06-21 11:57
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
1,612 by ac.research
Fri, 2017-06-30 05:44
Normal topic why two packing setting return different energy?
by zhangying1990 » Wed, 2019-01-30 00:18
2
845 by zhangying1990
Fri, 2019-02-01 00:30
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00
2
2,467 by msellers
Mon, 2014-04-21 06:47
Normal topic Enumerating torsion (dihedral) angles
by ajasja » Wed, 2014-10-01 09:10
2
2,808 by rmoretti
Mon, 2014-10-06 15:10
Normal topic EnergyMethodCreator error when writing custom energy method
by furybubu » Mon, 2017-12-11 15:46
2
1,119 by furybubu
Tue, 2017-12-12 10:04
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
2,080 by protos_heis
Fri, 2015-02-27 13:38
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,228 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
691 by sheehajh
Wed, 2019-07-17 12:43
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28
2
976 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55
2
2,470 by astrofunk
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45
2
1,137 by ac.research
Wed, 2018-07-18 03:50
Normal topic [Solved] PyRosetta segmentation fault in Linux
by AlexI » Wed, 2010-02-03 22:59
2
2,947 by AlexI
Mon, 2014-04-21 06:47
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
338 by matteoferla
Fri, 2020-07-10 02:20
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
1,810 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
2,250 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
2,144 by ajasja
Thu, 2014-10-30 08:32
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
1,954 by xfliu
Mon, 2014-04-21 06:47
Normal topic eval_ci_2b() with hydrogen bonds
by TensorDuck » Fri, 2018-03-30 14:05
2
1,202 by TensorDuck
Mon, 2018-04-02 13:41
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,525 by Sergey
Thu, 2017-08-31 04:39
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,232 by parmef
Sat, 2017-06-24 03:18
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,713 by lah435
Mon, 2014-08-18 17:23
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,250 by Sergey
Mon, 2014-04-21 06:47
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
1,112 by yijietseng
Tue, 2019-05-07 11:02
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
2,771 by Stefan
Mon, 2014-04-21 06:47
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13
2
2,897 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
1,381 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
676 by tfobe
Mon, 2019-05-20 16:05
Normal topic installing PyRosetta on Mac OSX 10.6 and Linux in VMWare
by sid » Tue, 2009-10-06 09:04
2
2,731 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
769 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
44 by matteoferla
Fri, 2020-11-20 07:47
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,376 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
659 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,109 by ajasja
Thu, 2014-07-03 05:36
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
1,434 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
1,762 by drluca77
Mon, 2014-04-21 06:47
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
1,654 by ajasja
Mon, 2014-09-22 09:53
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
2,049 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Relax with constraints
by yijietseng » Tue, 2019-05-07 11:16
2
1,001 by yijietseng
Wed, 2019-05-22 09:54
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
3,014 by cno
Mon, 2014-04-21 06:47
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
2,199 by bbrown11
Wed, 2015-03-04 18:49
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
593 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,531 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
2,651 by kim-nguyen
Fri, 2015-07-24 23:04
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
1,385 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25
2
3,198 by SunH
Mon, 2014-04-21 06:47
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
269 by matteoferla
Fri, 2020-10-09 05:20
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
2,346 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,328 by Sergey
Mon, 2014-04-21 06:48
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
670 by yijietseng
Fri, 2019-05-31 12:21
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
2,506 by weitzner
Mon, 2014-04-21 06:47
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
1,578 by ac.research
Thu, 2017-07-06 11:09
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
1,645 by sid
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
2,780 by smlewis
Mon, 2014-04-21 06:47
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18
2
1,189 by MNP1986
Tue, 2018-07-31 23:50
Normal topic Failure appending a residue
by rfschleif » Thu, 2011-06-16 10:53
2
2,528 by smlewis
Mon, 2014-04-21 06:47
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
1,943 by AlexI
Mon, 2014-04-21 06:47
Normal topic [Solved] Segmentation fault
by zgcarvalho » Thu, 2010-02-11 06:30
2
3,336 by zgcarvalho
Mon, 2014-04-21 06:47
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
1,647 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic Getting interface residues?
by JuliusSu » Wed, 2014-04-16 21:58
2
1,713 by JuliusSu
Thu, 2014-04-17 18:34
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,588 by lah435
Mon, 2014-04-21 06:47
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04
2
3,928 by smlewis
Mon, 2014-04-21 06:47
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,445 by ajasja
Fri, 2014-08-22 08:32
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