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PyRosetta - General

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Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
1,784 by ac.research
Fri, 2018-05-11 15:46
Normal topic Calling SnugDock from PyRosetta
by shruthi.murali » Wed, 2020-07-29 15:10
3
446 by matteoferla
Fri, 2020-08-07 03:29
Normal topic fragment building
by StevPChem » Tue, 2015-08-04 09:01
3
3,201 by StevPChem
Thu, 2015-08-06 11:07
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
2,760 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic How to fold membrane protein in PyRosetta?
by assignfit » Fri, 2011-02-25 21:39
3
2,816 by assignfit
Mon, 2014-04-21 06:47
Normal topic Getting chi rotamers
by ajasja » Tue, 2014-08-26 12:11
3
3,019 by rmoretti
Tue, 2014-09-23 08:36
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57
3
2,887 by msellers
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53
3
508 by rmoretti
Thu, 2020-07-09 08:35
Normal topic "No Python class registered..." when trying to access SymDofs
by pitmand » Tue, 2015-03-17 14:29
3
3,419 by Sergey
Fri, 2015-03-27 14:34
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
3,066 by Victor
Mon, 2014-04-21 06:47
Normal topic add missing residues into rna
by galvaner » Tue, 2015-09-15 16:41
3
2,727 by galvaner
Mon, 2015-09-21 13:37
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44
3
3,122 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
2,919 by smlewis
Mon, 2014-04-21 06:47
Normal topic ClassicRelax: how to block the backbone
by oppopomoz » Fri, 2015-11-27 08:17
3
2,705 by rmoretti
Tue, 2015-12-01 15:18
Normal topic [Solved] Docking in metalloprotease (Zinc problem)
by zgcarvalho » Wed, 2010-01-20 16:04
3
3,514 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Generating random number using numeric.random
by resiros » Thu, 2014-10-23 09:25
3
2,619 by rmoretti
Wed, 2014-10-29 10:00
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
2,728 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
969 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
2,704 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic interaction energies between atoms
by Stefan » Thu, 2011-04-14 06:15
3
4,136 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
2,356 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,302 by LiorZ
Fri, 2016-06-17 08:20
Normal topic Rosetta get_fa_scorefxn()
by israeldesta » Thu, 2019-10-31 10:18
3
1,265 by jadolfbr
Thu, 2019-11-14 15:33
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
3,340 by Apiwat
Mon, 2014-04-21 06:48
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20
3
3,183 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Rotamer bin vector from chi angles of a residue in pose not found in Dunbrack rotamer library
by AyushGoyal » Mon, 2014-02-24 22:18
3
3,534 by rmoretti
Wed, 2014-02-26 09:40
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
1,791 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
2,603 by rmoretti
Mon, 2014-04-21 06:47
Normal topic About missing disulfide partners for residue...
by Mon » Wed, 2014-12-17 05:37
3
3,740 by jadolfbr
Thu, 2014-12-18 09:37
Normal topic set constraints
by zgcarvalho » Wed, 2010-02-24 09:42
3
2,104 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39
3
357 by Peik
Thu, 2020-08-06 11:50
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
4,928 by smlewis
Mon, 2014-04-21 06:47
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
2,789 by Sergey
Wed, 2015-08-19 15:47
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dunbrack Library
by jadolfbr » Tue, 2011-05-10 13:59
3
2,705 by weitzner
Mon, 2014-04-21 06:47
Normal topic Resfile Error
by ac.research » Wed, 2019-07-17 13:25
3
1,321 by vmulligan
Fri, 2019-07-26 15:08
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
2,262 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic Best Way to Append/Insert Residue
by jaulicino » Tue, 2020-07-21 10:24
3
550 by matteoferla
Sat, 2020-07-25 03:52
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
1,612 by rmoretti
Sat, 2017-12-16 14:06
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
1,835 by lah435
Fri, 2017-06-16 12:24
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30
3
2,419 by juden99
Mon, 2014-04-21 06:47
Normal topic Disuplhide bonds
by batch2k » Tue, 2009-12-15 09:57
3
3,177 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
3,060 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
3,174 by smlewis
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
3,022 by smlewis
Mon, 2014-04-21 06:47
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
3,452 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02
3
323 by vmulligan
Tue, 2020-10-06 15:13
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34
3
2,859 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
3,138 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,489 by rmoretti
Wed, 2015-10-07 16:35
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42
3
2,573 by Sergey
Mon, 2014-04-21 06:48
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
807 by smlewis
Tue, 2019-07-23 13:27
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
2,937 by rmoretti
Mon, 2014-09-29 00:06
Normal topic Using OStream objects in PyRosetta
by ggyimesi » Mon, 2014-02-10 03:10
3
2,866 by ggyimesi
Mon, 2014-02-17 09:52
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
4,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
3,073 by cno
Mon, 2014-04-21 06:47
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,756 by lah435
Mon, 2014-08-18 17:23
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
1,297 by parmef
Sat, 2017-06-24 03:18
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
2,558 by weitzner
Mon, 2014-04-21 06:47
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
1,702 by sid
Mon, 2014-04-21 06:47
Normal topic Failure appending a residue
by rfschleif » Thu, 2011-06-16 10:53
2
2,585 by smlewis
Mon, 2014-04-21 06:47
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
2,003 by AlexI
Mon, 2014-04-21 06:47
Normal topic Where can I found the dictory of all function of Pyrosetta?
by sprinkle166 » Mon, 2017-10-16 13:58
2
1,283 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,371 by Sergey
Mon, 2014-04-21 06:48
Normal topic [Solved] Segmentation fault
by zgcarvalho » Thu, 2010-02-11 06:30
2
3,412 by zgcarvalho
Mon, 2014-04-21 06:47
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,162 by ajasja
Thu, 2014-07-03 05:36
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,443 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
2,831 by smlewis
Mon, 2014-04-21 06:47
Normal topic dG(partner) and ddG(bind)
by levinthal » Sat, 2010-08-21 17:04
2
3,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
1,700 by ajasja
Mon, 2014-09-22 09:53
Normal topic Different types of MinMover
by nasim.soltani58 » Sun, 2020-12-20 11:44
2
104 by nasim.soltani58
Tue, 2020-12-22 13:37
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
2,261 by bbrown11
Wed, 2015-03-04 18:49
Normal topic why two packing setting return different energy?
by zhangying1990 » Wed, 2019-01-30 00:18
2
919 by zhangying1990
Fri, 2019-02-01 00:30
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,633 by lah435
Mon, 2014-04-21 06:47
Normal topic Complex DNA Protein docking
by kim-nguyen » Wed, 2015-07-22 13:49
2
2,703 by kim-nguyen
Fri, 2015-07-24 23:04
Normal topic EnergyMethodCreator error when writing custom energy method
by furybubu » Mon, 2017-12-11 15:46
2
1,195 by furybubu
Tue, 2017-12-12 10:04
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,588 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
774 by sheehajh
Wed, 2019-07-17 12:43
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
2,400 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28
2
1,048 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45
2
1,210 by ac.research
Wed, 2018-07-18 03:50
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00
2
2,534 by msellers
Mon, 2014-04-21 06:47
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
446 by matteoferla
Fri, 2020-07-10 02:20
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,950 by Sergey
Mon, 2014-04-21 06:47
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55
2
2,526 by astrofunk
Mon, 2014-04-21 06:47
Normal topic eval_ci_2b() with hydrogen bonds
by TensorDuck » Fri, 2018-03-30 14:05
2
1,287 by TensorDuck
Mon, 2018-04-02 13:41
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,605 by Sergey
Thu, 2017-08-31 04:39
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
1,697 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic [Solved] PyRosetta segmentation fault in Linux
by AlexI » Wed, 2010-02-03 22:59
2
3,003 by AlexI
Mon, 2014-04-21 06:47
Normal topic Getting interface residues?
by JuliusSu » Wed, 2014-04-16 21:58
2
1,772 by JuliusSu
Thu, 2014-04-17 18:34
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
1,472 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Error with etable_atom_pair_energies()
by yijietseng » Mon, 2019-01-28 14:00
2
1,203 by yijietseng
Tue, 2019-05-07 11:02
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
753 by tfobe
Mon, 2019-05-20 16:05
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,537 by ajasja
Fri, 2014-08-22 08:32
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,277 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic How to determine interface residues
by rbehan » Wed, 2015-10-14 11:25
2
3,176 by rmoretti
Fri, 2016-06-17 09:25
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
860 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
726 by rmoretti
Wed, 2019-09-18 14:24
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
164 by matteoferla
Fri, 2020-11-20 07:47
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