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PyRosetta - General

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Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
1,585 by ast
Mon, 2014-04-21 06:47
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25
1
1,712 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,184 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,894 by Sergey
Mon, 2014-04-21 06:47
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47
4
2,845 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
3,007 by cno
Mon, 2014-04-21 06:47
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
2,980 by Victor
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,072 by Victor
Mon, 2014-04-21 06:47
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,098 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
3,337 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
1,514 by Sergey
Mon, 2014-04-21 06:47
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
3,092 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54
6
3,538 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,456 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
3,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
1,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
4,082 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,045 by smlewis
Mon, 2014-04-21 06:47
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
3,770 by Sergey
Mon, 2014-04-21 06:47
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33
5
3,545 by xfliu
Mon, 2014-04-21 06:47
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
1,602 by smlewis
Mon, 2014-04-21 06:47
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
3,153 by AOK
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01
5
4,206 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21
6
3,581 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13
2
2,882 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
1,549 by xfliu
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
4,100 by smlewis
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
2,537 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to read a silent file ?
by Anonymous » Wed, 2012-06-27 09:34
12
6,877 by Anonymous
Mon, 2014-04-21 06:47
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
5,319 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
3,986 by smlewis
Mon, 2014-04-21 06:47
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
17,507 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06
10
6,615 by ggyimesi
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
4,840 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
1,951 by xfliu
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
1,619 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37
8
4,530 by xfliu
Mon, 2014-04-21 06:47
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,580 by lah435
Mon, 2014-04-21 06:47
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02
8
6,892 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
2,946 by smlewis
Mon, 2014-04-21 06:47
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29
5
4,187 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
2,772 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
2,302 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
4,846 by eberhardt
Mon, 2014-04-21 06:47
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,245 by Sergey
Mon, 2014-04-21 06:47
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21
4
4,361 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
1,860 by linucks
Mon, 2014-04-21 06:47
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56
6
4,038 by LiorZ
Mon, 2014-04-21 06:47
Hot topic HBondEnergy
by bharat_46010 » Wed, 2013-05-15 19:03
15
10,759 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how can we calculate Rosetta score on some decoy set?
by mirzaie » Wed, 2013-06-19 08:43
13
9,200 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
3,190 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
8,679 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
1,587 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
2,896 by Victor
Mon, 2014-04-21 06:48
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
1,850 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,318 by Sergey
Mon, 2014-04-21 06:48
Normal topic Create PDB for heterodimer
by pachecoj » Mon, 2013-08-05 19:11
1
4,596 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Calculate residue-residue pairwise energies
by pachecoj » Tue, 2013-07-23 04:51
4
4,679 by Sergey
Mon, 2014-04-21 06:48
Hot topic Energy Minimization
by bharat_46010 » Wed, 2013-07-31 20:45
24
20,594 by rmoretti
Mon, 2014-04-21 06:48
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
1,703 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Questions on rotamer-rotamer energies
by pachecoj » Fri, 2013-07-26 05:01
3
3,065 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25
1
1,641 by smlewis
Mon, 2014-04-21 06:48
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,008 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06
1
1,450 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
2,999 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Documentation of ``mysterious'' protocols
by ñ » Wed, 2013-10-30 08:19
3
2,694 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Error in loop modeling protocol
by jai_INMAS » Fri, 2013-10-18 07:08
5
3,902 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Regarding the Documentation of Rosetta and PyRosetta
by jai_INMAS » Tue, 2013-10-22 23:41
3
2,630 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25
1
1,459 by rmoretti
Mon, 2014-04-21 06:48
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,214 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic change dihedral angles of any residue
by bharat_46010 » Fri, 2013-11-15 00:30
3
3,375 by bharat_46010
Mon, 2014-04-21 06:48
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
1,826 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fragments file
by Run » Tue, 2013-11-26 02:40
4
3,249 by rmoretti
Mon, 2014-04-21 06:48
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
1,804 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Rotamer information from pose
by AyushGoyal » Wed, 2014-01-15 14:37
7
6,131 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Alignment and RMSD
by ñ » Wed, 2013-11-27 12:43
5
6,787 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
3,263 by Apiwat
Mon, 2014-04-21 06:48
Normal topic Symmetric pose initialization fails
by gudmal » Tue, 2013-11-26 06:42
3
2,498 by Sergey
Mon, 2014-04-21 06:48
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
2,152 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Quadratic Function for Distance Constraints?
by protos_heis » Mon, 2014-01-27 06:21
4
2,757 by protos_heis
Mon, 2014-04-21 06:48
Normal topic How to calculate the pairwise rotamer-to-rotamer energy table between mutable residues allowed to change to all amino acid types
by AyushGoyal » Wed, 2014-01-22 16:24
7
6,015 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Getting which rigid body a residue belongs to?
by JuliusSu » Thu, 2014-04-17 21:12
3
2,669 by jadolfbr
Mon, 2014-04-21 17:28
Normal topic Capturing the output of scorefxn.show(pose)
by ajasja » Fri, 2014-06-20 05:30
2
2,585 by ajasja
Sat, 2014-06-21 11:57
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,104 by ajasja
Thu, 2014-07-03 05:36
Normal topic Approximating CHARMM energy by the rosetta scoring function
by ajasja » Fri, 2014-06-20 02:16
4
3,744 by ajasja
Thu, 2014-07-03 05:53
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
3,314 by nawsad
Sun, 2014-07-13 00:49
Normal topic Argument error when running D120_Ligand_interface.py
by piladam » Wed, 2014-07-09 10:43
5
4,982 by rmoretti
Mon, 2014-07-21 11:15
Normal topic task_pack.restrict_to_repacking() not working
by lanselibai » Mon, 2014-08-11 08:06
1
1,340 by rmoretti
Tue, 2014-08-12 08:35
Normal topic Can we have email alert for the reply?
by lanselibai » Wed, 2014-08-13 13:24
0
1,215 by lanselibai
Wed, 2014-08-13 13:24
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
1,679 by Sergey
Thu, 2014-08-14 11:54
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
5,592 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,699 by lah435
Mon, 2014-08-18 17:23
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,430 by ajasja
Fri, 2014-08-22 08:32
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
2,338 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
4,012 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
1,627 by Labonte
Mon, 2014-09-08 09:13
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
2,849 by dsim
Mon, 2014-09-15 07:47
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
1,814 by rmoretti
Wed, 2014-09-17 07:29
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
5,323 by ajasja
Mon, 2014-09-22 09:51
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
1,647 by ajasja
Mon, 2014-09-22 09:53
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