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PyRosetta - General

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Normal topic Pyrosetta protocol to move protein-peptide docked complex closer to active site.
by eduardoftoliveira » Fri, 2018-06-29 02:50
0
991 by eduardoftoliveira
Fri, 2018-06-29 03:46
Normal topic PyRosetta on a HPC
by ac.research » Thu, 2019-03-14 02:00
1
660 by rmoretti
Wed, 2019-07-10 10:17
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,302 by LiorZ
Fri, 2016-06-17 08:20
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
1,550 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Pyrosetta imported after rdkit
by matteoferla » Sun, 2020-03-01 02:38
0
340 by matteoferla
Sun, 2020-03-01 02:38
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,605 by Sergey
Thu, 2017-08-31 04:39
Normal topic PyRosetta FastDesign
by ac.research » Tue, 2017-07-04 10:23
9
4,998 by ac.research
Wed, 2017-07-05 16:59
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20
6
5,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,293 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta AbInitio Folding protocol
by batch2k » Tue, 2009-12-15 11:09
7
8,890 by jadolfbr
Thu, 2015-02-05 10:32
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
6,428 by weitzner
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
2,919 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta 1.1 for Windows?
by sylvia » Tue, 2010-02-09 16:06
0
1,011 by sylvia
Mon, 2014-04-21 06:47
Normal topic PyRosetta + PyMol
by reve_etrange » Mon, 2009-11-23 16:44
3
3,122 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Pypy not working, python works...
by MarkW » Thu, 2015-03-05 05:15
4
5,049 by MarkW
Mon, 2015-08-24 04:43
Normal topic pymover = PyMOL_Mover() hangs IPython?
by cossio » Fri, 2015-04-10 07:38
4
3,234 by cossio
Wed, 2015-04-15 12:31
Normal topic PyMOLMover object has no attribute 'link'
by nleroy » Mon, 2019-07-22 07:51
0
395 by nleroy
Mon, 2019-07-22 07:51
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
2,111 by Sergey
Tue, 2018-05-15 11:20
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
1,634 by rmoretti
Wed, 2015-08-12 10:29
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
1,414 by rmoretti
Mon, 2017-09-04 09:52
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
1,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein docking with PyRosetta Error!
by Apiwat » Sat, 2014-01-11 23:32
3
3,340 by Apiwat
Mon, 2014-04-21 06:48
Normal topic Problems with SmoothFragmentMover
by epalovcak » Wed, 2013-10-02 09:20
3
3,060 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
5,485 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems with building bindings.
by AndrewBworth » Thu, 2010-02-04 17:26
0
1,308 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,162 by ajasja
Thu, 2014-07-03 05:36
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,950 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problem about Pyrosetta installation win7
by sprinkle166 » Mon, 2017-09-04 20:15
5
2,647 by sprinkle166
Fri, 2017-09-08 12:57
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose_from_sequence with modified residue
by nawsad » Wed, 2014-06-25 02:59
4
3,396 by nawsad
Sun, 2014-07-13 00:49
Normal topic pose_from_rcsb error
by criss.hartzell » Wed, 2020-04-22 15:12
1
427 by matteoferla
Thu, 2020-04-30 12:04
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,044 by cossio
Fri, 2014-11-28 05:05
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,489 by rmoretti
Wed, 2015-10-07 16:35
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
3,174 by smlewis
Mon, 2014-04-21 06:47
Normal topic Passing a dictionary from pyrosetta to rosetta
by SenyorDrew » Mon, 2017-11-13 11:33
1
827 by rmoretti
Fri, 2017-12-01 10:10
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,600 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Parallel processing?
by mark.wilson » Mon, 2010-07-26 15:12
6
7,964 by msellers
Mon, 2014-04-21 06:47
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,045 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
891 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
4,188 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
3,446 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
1,724 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
969 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic Nonstandard residue parameters fail
by lah435 » Wed, 2014-08-06 17:53
2
2,756 by lah435
Mon, 2014-08-18 17:23
Normal topic Non-standard amino acids
by mark.wilson » Mon, 2010-08-02 12:13
0
1,281 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
8,920 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
1,890 by rmoretti
Mon, 2014-04-21 06:48
Normal topic newbie question re pose syntax
by Amy F » Mon, 2019-04-15 12:50
10
2,929 by jadolfbr
Wed, 2019-04-24 10:12
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,537 by ajasja
Fri, 2014-08-22 08:32
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
2,346 by MNP1986
Mon, 2018-12-03 04:02
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,100 by Victor
Mon, 2014-04-21 06:47
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
1,739 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help figuring out the meaning and cause of an error
by AleksanderK » Fri, 2019-05-03 11:02
1
631 by rmoretti
Thu, 2019-05-09 14:32
Normal topic Namespace PyRosetta Build for Windows?
by protos_heis » Sat, 2015-08-15 10:49
3
2,790 by Sergey
Wed, 2015-08-19 15:47
Normal topic Muting output in pyrosetta
by SenyorDrew » Mon, 2017-08-14 08:13
6
3,376 by SenyorDrew
Tue, 2017-08-15 07:41
Normal topic mutate_residue doesn't mutate
by dsim » Wed, 2015-03-18 02:32
6
4,845 by rmoretti
Fri, 2016-04-29 09:48
Normal topic mutate_residue not working
by lanselibai » Mon, 2014-08-11 03:55
7
5,734 by lanselibai
Sun, 2014-08-17 07:30
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
753 by tfobe
Mon, 2019-05-20 16:05
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02
1
1,508 by smlewis
Mon, 2014-04-21 06:47
Normal topic Motif Graft Mover error
by ac.research » Tue, 2019-03-26 13:25
1
732 by rmoretti
Thu, 2019-05-09 15:56
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
18,034 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
726 by rmoretti
Wed, 2019-09-18 14:24
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
1,791 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Missing residue coordinates in PDB files
by lanselibai » Thu, 2014-09-04 07:34
1
4,067 by rmoretti
Thu, 2014-09-04 11:36
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,633 by lah435
Mon, 2014-04-21 06:47
Normal topic Minimization question
by rfschleif » Wed, 2011-05-25 06:59
14
8,269 by Sergey
Mon, 2014-04-21 06:47
Normal topic Minimization not changing jump edge vector length
by bio_james » Tue, 2017-12-12 09:32
1
799 by rmoretti
Sat, 2017-12-16 10:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,494 by smlewis
Mon, 2014-04-21 06:47
Hot topic Making mutations in PyRosetta?
by thorx020 » Thu, 2012-08-09 09:24
15
13,834 by ajasja
Mon, 2014-09-22 10:17
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
1,631 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,277 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
1,450 by MarkW
Sun, 2015-02-08 14:14
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
1,498 by rmoretti
Fri, 2015-04-24 13:17
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
2,302 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Libmini crashes after protocol run
by whooper » Tue, 2017-01-31 09:48
1
1,199 by Sergey
Tue, 2017-01-31 13:42
Normal topic Large Memory usage in Windows r10 Build
by ajasja » Fri, 2014-08-22 09:09
4
5,414 by ajasja
Mon, 2014-09-22 09:51
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00
1
1,898 by smlewis
Mon, 2014-04-21 06:47
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00
1
2,251 by smlewis
Mon, 2014-04-21 06:47
Normal topic Iterating over graph edges in PyRosetta.
by ajasja » Mon, 2014-09-22 07:21
3
2,937 by rmoretti
Mon, 2014-09-29 00:06
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
1,858 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25
2
3,260 by SunH
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer with Glycans
by drewaight » Tue, 2020-06-09 20:06
1
336 by matteoferla
Wed, 2020-07-01 05:30
Normal topic interaction energies between atoms
by Stefan » Thu, 2011-04-14 06:15
3
4,136 by smlewis
Mon, 2014-04-21 06:47
Normal topic installing PyRosetta on non-Intel-based Mac platform
by sid » Tue, 2009-10-06 09:07
1
1,376 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic installing PyRosetta on Mac OSX 10.6 and Linux in VMWare
by sid » Tue, 2009-10-06 09:04
2
2,808 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20
3
3,183 by evo_umich
Mon, 2014-04-21 06:47
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56
6
4,154 by LiorZ
Mon, 2014-04-21 06:47
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
749 by yijietseng
Fri, 2019-05-31 12:21
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
4,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic Inconsistencies in full atom energy calculations
by dsim » Tue, 2014-07-29 06:02
4
2,927 by dsim
Mon, 2014-09-15 07:47
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29
0
2,238 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic I don't know what's the problem when load the fragment file
by john8611 » Mon, 2014-09-29 03:45
5
4,435 by rmoretti
Tue, 2014-09-30 13:16
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
1,734 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic How to use SAXS energy score in PyRosetta
by Jie Hou » Mon, 2016-09-05 08:31
5
3,543 by rmoretti
Mon, 2016-11-14 13:21
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
1,609 by ast
Mon, 2014-04-21 06:47
Normal topic How to tell where and what fragment or rotamer was inserted?
by charlie.strauss » Wed, 2010-01-27 10:36
0
1,098 by charlie.strauss
Mon, 2014-04-21 06:47
Normal topic How to set up external C++ folding server
by seanle24245 » Sat, 2016-06-11 10:54
8
4,937 by seanle24245
Sun, 2016-06-19 18:30
Normal topic How to set options under PyRosetta
by lennylv » Thu, 2011-01-06 18:11
1
2,757 by Sergey
Mon, 2014-04-21 06:47
Normal topic how to realize a free bb design? PackMover=fixed bb!
by ast » Wed, 2011-08-31 09:41
1
2,623 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
1,656 by ac.research
Thu, 2017-07-06 11:09
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