You are here

PyRosetta - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic segfault in loop
by reve_etrange » Sat, 2010-02-13 21:49
1
2,255 by reve_etrange
Mon, 2014-04-21 06:47
Normal topic Output several poses in a silent file
by SenyorDrew » Tue, 2018-03-20 07:12
1
2,264 by Martin Floor
Tue, 2018-12-11 05:43
Normal topic Frequently Asked Questions
by sid » Fri, 2009-10-02 09:00
0
2,266 by sid
Mon, 2014-04-21 06:47
Normal topic How to create an ObjexxFCL FArray?
by matteoferla » Tue, 2020-08-18 03:22
3
2,275 by matteoferla
Thu, 2021-07-08 06:02
Normal topic installing PyRosetta on non-Intel-based Mac platform
by sid » Tue, 2009-10-06 09:07
1
2,284 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic how do i unding properly?
by patcD » Fri, 2020-11-20 00:38
2
2,299 by matteoferla
Fri, 2020-11-20 07:47
Normal topic Error when using "generate_resfile_from_pose" function
by zhangying1990 » Fri, 2019-01-25 00:45
1
2,314 by zhangying1990
Fri, 2019-02-01 00:44
Normal topic set_torsion_angle error
by yijietseng » Tue, 2019-07-09 12:43
2
2,315 by yijietseng
Wed, 2019-07-10 09:28
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25
1
2,316 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45
1
2,324 by rmoretti
Thu, 2014-04-03 07:27
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06
1
2,331 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Atom-wise energy terms from nearest N-neighbors
by jasiozaucha » Thu, 2021-03-25 14:49
3
2,339 by matteoferla
Fri, 2021-05-28 02:41
Normal topic Problem importing AlphaFold PDB
by Rick Neubig » Mon, 2023-01-09 09:48
4
2,349 by Rick Neubig
Tue, 2023-01-10 04:11
Normal topic Custom Constraints
by jinli711 » Wed, 2020-07-15 15:22
2
2,353 by matteoferla
Fri, 2020-10-09 05:20
Normal topic how do I compile the python bindings for rosetta3 for python2.5 linux x86_64
by tru » Wed, 2009-11-25 11:38
1
2,354 by luki
Mon, 2014-04-21 06:47
Normal topic [Solved]NameError
by nunesjulioc » Fri, 2010-02-05 08:26
1
2,355 by AlexI
Mon, 2014-04-21 06:47
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54
1
2,369 by sid
Mon, 2014-04-21 06:47
Normal topic individual residue score
by yijietseng » Wed, 2019-05-29 09:59
2
2,372 by yijietseng
Fri, 2019-05-31 12:21
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02
1
2,372 by smlewis
Mon, 2014-04-21 06:47
Normal topic Sample dihedral database
by tiagogomes89 » Mon, 2018-03-12 04:28
2
2,373 by tiagogomes89
Mon, 2018-03-12 10:01
Normal topic ΔG Calculation with PyRosetta
by Sandra » Tue, 2019-05-21 00:26
1
2,380 by rmoretti
Mon, 2019-06-24 12:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
2,382 by smlewis
Mon, 2014-04-21 06:47
Normal topic Individual Residue Energy
by Peik » Fri, 2021-02-19 10:13
2
2,403 by Peik
Fri, 2021-02-19 10:30
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
2,416 by rmoretti
Fri, 2015-04-24 13:17
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
2,419 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
2,440 by Sergey
Mon, 2014-04-21 06:47
Normal topic generate_nonstandard_residue_set() takes exactly 2 arguments (1given)
by yanghaobjordan » Mon, 2018-01-29 18:59
1
2,449 by rmoretti
Tue, 2018-01-30 06:29
Normal topic Falling at the first hurdle
by pardave » Tue, 2010-01-05 00:53
1
2,461 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Modeling small molecules
by iGemBoulder » Wed, 2019-09-18 11:53
2
2,463 by rmoretti
Wed, 2019-09-18 14:24
Normal topic fragment for polyAAA
by knutjbj » Mon, 2010-11-29 08:23
1
2,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Movers for unspecified DoF
by tfobe » Wed, 2019-04-17 17:30
2
2,493 by tfobe
Mon, 2019-05-20 16:05
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
2,498 by smlewis
Mon, 2014-04-21 06:47
Normal topic Repeat study
by thomashrabe » Tue, 2017-06-20 11:21
2
2,516 by parmef
Sat, 2017-06-24 03:18
Normal topic Question about the error when using pyrosetta.distributed.io
by cuiyoutian » Sun, 2019-05-19 00:54
1
2,530 by rmoretti
Mon, 2019-06-24 12:54
Normal topic 403 on documentation for PyRosetta
by matteoferla » Mon, 2022-06-06 12:19
1
2,550 by rmoretti
Mon, 2022-06-06 12:35
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
2,557 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
2,568 by smlewis
Mon, 2014-04-21 06:47
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
2,571 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Gradient Descent
by nasim.soltani58 » Thu, 2020-10-01 16:02
3
2,578 by vmulligan
Tue, 2020-10-06 15:13
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
2,584 by Labonte
Mon, 2014-09-08 09:13
Normal topic Calculate TM-score
by nasim.soltani58 » Fri, 2021-03-26 16:50
1
2,591 by rmoretti
Mon, 2021-03-29 06:53
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25
1
2,595 by smlewis
Mon, 2014-04-21 06:48
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
2,598 by Sergey
Mon, 2014-04-21 06:47
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where can I found the dictory of all function of Pyrosetta?
by sprinkle166 » Mon, 2017-10-16 13:58
2
2,623 by sprinkle166
Wed, 2017-10-18 09:06
Normal topic why two packing setting return different energy?
by zhangying1990 » Wed, 2019-01-30 00:18
2
2,623 by zhangying1990
Fri, 2019-02-01 00:30
Normal topic Fundamental methods: pose.residue().total_atom(), pose.atom(#) ?
by msellers » Mon, 2010-11-01 10:53
1
2,633 by smlewis
Mon, 2014-04-21 06:47
Normal topic Classic Relax
by iGemBoulder » Fri, 2019-06-28 09:24
2
2,641 by sheehajh
Wed, 2019-07-17 12:43
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
2,663 by rmoretti
Wed, 2015-08-12 10:29
Normal topic Residue is not compatible with cutpoints
by iGemBoulder » Thu, 2019-06-06 08:57
2
2,683 by iGemBoulder
Tue, 2019-06-11 08:36
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25
1
2,688 by Sergey
Mon, 2014-04-21 06:47
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
2,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
2,698 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
2,712 by Sergey
Thu, 2014-08-14 11:54
Normal topic EnergyMethodCreator error when writing custom energy method
by furybubu » Mon, 2017-12-11 15:46
2
2,713 by furybubu
Tue, 2017-12-12 10:04
Normal topic Generating Atom Pair Constraints
by Peik » Wed, 2020-08-05 15:39
3
2,717 by Peik
Thu, 2020-08-06 11:50
Normal topic Is this the intended behaviour?
by Ken » Thu, 2022-05-05 14:59
2
2,723 by Ken
Fri, 2022-05-06 07:03
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
2,733 by linucks
Mon, 2014-04-21 06:47
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
2,738 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Boost.Python C++/PyRosetta interop
by gipsonb » Wed, 2010-10-06 15:15
1
2,749 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
2,763 by rmoretti
Wed, 2015-12-16 11:25
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
2,769 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
2,813 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
2,828 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Adding a residue type to a residue type set
by matteoferla » Wed, 2020-07-08 08:14
2
2,830 by matteoferla
Fri, 2020-07-10 02:20
Normal topic Alternatives to DockMCMProtocol
by swirt » Thu, 2021-01-28 17:37
4
2,840 by swirt
Thu, 2021-02-25 21:54
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
2,843 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00
1
2,853 by smlewis
Mon, 2014-04-21 06:47
Normal topic PSIPRED secondary structure prediction in PyRosetta
by ac.research » Fri, 2017-09-01 22:56
1
2,856 by rmoretti
Mon, 2017-09-04 09:52
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
2,862 by rmoretti
Mon, 2015-10-26 13:57
Normal topic RosettaDesign Result Evaluation
by ac.research » Tue, 2018-06-05 18:45
2
2,886 by ac.research
Wed, 2018-07-18 03:50
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
2,902 by sid
Mon, 2014-04-21 06:47
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
2,906 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
2,910 by ajasja
Mon, 2014-09-22 09:53
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
2,932 by ajasja
Wed, 2014-09-24 08:57
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29
0
2,936 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
2,941 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,961 by rmoretti
Mon, 2014-04-21 06:48
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
2,963 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
2,983 by drluca77
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized element Rp when using pose_from_pdb
by johnnytam100 » Thu, 2020-07-09 02:53
3
2,991 by rmoretti
Thu, 2020-07-09 08:35
Normal topic Designating Fold Tree Edges as Flexible or Rigid
by nleroy » Tue, 2019-07-23 11:34
3
2,994 by smlewis
Tue, 2019-07-23 13:27
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
2,996 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
3,000 by rmoretti
Fri, 2017-06-16 07:22
Normal topic eval_ci_2b() with hydrogen bonds
by TensorDuck » Fri, 2018-03-30 14:05
2
3,003 by TensorDuck
Mon, 2018-04-02 13:41
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
3,033 by ac.research
Thu, 2017-07-06 11:09
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
3,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
3,072 by cossio
Fri, 2014-11-28 05:05
Normal topic Getting interface residues?
by JuliusSu » Wed, 2014-04-16 21:58
2
3,088 by JuliusSu
Thu, 2014-04-17 18:34
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
3,115 by Sergey
Mon, 2014-04-21 06:47
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
3,131 by rmoretti
Wed, 2014-09-17 07:29
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
3,147 by Sergey
Thu, 2017-08-31 04:39
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
3,180 by ac.research
Fri, 2017-06-30 05:44
Normal topic Alternative to MinMover
by MNP1986 » Tue, 2018-07-31 02:18
2
3,182 by MNP1986
Tue, 2018-07-31 23:50
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
3,188 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noob question about optimizing a pose
by AleksanderK » Fri, 2019-04-26 10:49
3
3,188 by AleksanderK
Fri, 2019-05-03 10:57
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
3,209 by AlexI
Mon, 2014-04-21 06:47
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
3,231 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
3,235 by xfliu
Mon, 2014-04-21 06:47
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34
1
3,252 by mark.wilson
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - PyRosetta - General