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PyRosetta - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic ClassicRelax with ligand
by S » Mon, 2010-09-27 07:55
1
1,376 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cutout part of a protein
by ac.research » Wed, 2017-05-31 11:55
2
1,376 by jadolfbr
Sat, 2017-06-03 19:20
Normal topic Using InterfaceSasaFilter
by SenyorDrew » Thu, 2017-10-26 07:53
2
1,381 by SenyorDrew
Thu, 2017-10-26 13:30
Normal topic Which function can be use for mutation?
by sprinkle166 » Wed, 2017-10-18 09:10
2
1,385 by sprinkle166
Thu, 2017-10-19 12:57
Normal topic Dose it support Fixed Backbone Ddg Prediction?
by ppprotein » Fri, 2010-01-29 00:54
1
1,389 by sid
Mon, 2014-04-21 06:47
Normal topic London
by MarkW » Sun, 2015-02-08 14:14
0
1,424 by MarkW
Sun, 2015-02-08 14:14
Normal topic how do I compile the python bindings for rosetta3 for python2.5 linux x86_64
by tru » Wed, 2009-11-25 11:38
1
1,431 by luki
Mon, 2014-04-21 06:47
Normal topic Reading poses from silent file that need a params file
by Martin Floor » Mon, 2018-08-13 12:25
2
1,434 by Martin Floor
Mon, 2018-08-27 10:51
Normal topic Replace the rotamer of a particular residue in a pose
by AyushGoyal » Wed, 2014-04-02 23:45
1
1,435 by rmoretti
Thu, 2014-04-03 07:27
Normal topic Scoring after switching back to fullatom
by thorx020 » Thu, 2013-10-03 08:06
1
1,455 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,457 by smlewis
Mon, 2014-04-21 06:47
Normal topic Script running, but returns no results
by chinhsutran » Fri, 2013-11-22 06:25
1
1,459 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand dihedral moves
by lah435 » Tue, 2015-03-03 11:56
1
1,461 by rmoretti
Fri, 2015-04-24 13:17
Normal topic Movemap Question
by jadolfbr » Thu, 2010-01-07 11:02
1
1,462 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fundamental methods: pose.residue().total_atom(), pose.atom(#) ?
by msellers » Mon, 2010-11-01 10:53
1
1,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic dump_pdb problems
by srballard » Fri, 2010-05-28 14:04
0
1,492 by srballard
Mon, 2014-04-21 06:47
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
1,508 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
1,516 by Sergey
Mon, 2014-04-21 06:47
Normal topic BluePrintBDRMover set_atom_type error
by ac.research » Sat, 2017-12-09 02:16
3
1,519 by rmoretti
Sat, 2017-12-16 14:06
Normal topic Falling at the first hurdle
by pardave » Tue, 2010-01-05 00:53
1
1,524 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic PyRosetta Global Docking
by ac.research » Sat, 2017-08-26 03:31
2
1,525 by Sergey
Thu, 2017-08-31 04:39
Normal topic Reading constraints from a file
by lah435 » Wed, 2017-06-14 18:56
2
1,531 by rmoretti
Fri, 2017-06-16 07:22
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
1,553 by xfliu
Mon, 2014-04-21 06:47
Normal topic Parsing XML tags using pyrosetta
by rbehan » Mon, 2015-10-19 06:37
1
1,553 by rmoretti
Mon, 2015-10-19 08:25
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
1,559 by smlewis
Mon, 2014-04-21 06:47
Normal topic How To Read PyRosetta Documentation - GenericMonteCarloMover as example
by ac.research » Wed, 2017-07-05 09:08
2
1,578 by ac.research
Thu, 2017-07-06 11:09
Normal topic PyMOL did not work from a remote machine with PyRosetta
by Jeremy1990 » Sat, 2015-08-08 21:25
1
1,585 by rmoretti
Wed, 2015-08-12 10:29
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
1,587 by ast
Mon, 2014-04-21 06:47
Normal topic Rigid body perturbation while docking
by wajidarshad » Fri, 2015-12-11 02:14
1
1,589 by rmoretti
Wed, 2015-12-16 11:25
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
1,591 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic fragment for polyAAA
by knutjbj » Mon, 2010-11-29 08:23
1
1,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic Frequently Asked Questions
by sid » Fri, 2009-10-02 09:00
0
1,604 by sid
Mon, 2014-04-21 06:47
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
1,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with constraints in PyRosetta
by ac.research » Tue, 2017-11-21 10:17
1
1,611 by rmoretti
Sat, 2017-12-09 01:50
Normal topic SASA of pose
by ac.research » Mon, 2017-06-26 03:55
2
1,612 by ac.research
Fri, 2017-06-30 05:44
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
1,624 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in loop modeling protocol its showing error "NameError: name 'ccd_closure' is not defined"
by jai_INMAS » Sun, 2013-10-20 05:22
1
1,629 by Labonte
Mon, 2014-09-08 09:13
Normal topic how to add water into protein interface using solvated rotamers?
by chinhsutran » Sun, 2013-07-21 20:25
1
1,644 by smlewis
Mon, 2014-04-21 06:48
Normal topic Are there any plans to make PyRosetta directly functional on 64-bit architecture?
by AndrewBworth » Fri, 2009-12-18 10:09
2
1,645 by sid
Mon, 2014-04-21 06:47
Normal topic Glycan in IgG1 Fc
by seanle24245 » Fri, 2016-07-22 07:50
2
1,647 by jadolfbr
Fri, 2016-07-22 10:29
Normal topic Difference between GenericMonteCarloMover() and GenericSimulatedAnnealer()
by ac.research » Fri, 2018-05-11 10:37
4
1,651 by ac.research
Fri, 2018-05-11 15:46
Normal topic Forum webpage not working
by ajasja » Mon, 2014-09-22 06:14
2
1,654 by ajasja
Mon, 2014-09-22 09:53
Normal topic Calculating sasa per atom and atomid_map
by ioannis.f » Wed, 2014-08-13 05:26
1
1,682 by Sergey
Thu, 2014-08-14 11:54
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
1,686 by Sergey
Mon, 2014-04-21 06:47
Normal topic number of residues in a specific chain
by felipet » Mon, 2015-03-09 09:30
1
1,687 by jadolfbr
Mon, 2015-03-09 12:54
Normal topic Mistake about rosetta.init()
by sprinkle166 » Tue, 2017-09-26 09:46
3
1,689 by sprinkle166
Wed, 2017-09-27 09:17
Normal topic Using a custom scoring method in a high resolution refinement
by kalabharath » Sun, 2015-10-25 22:28
1
1,696 by rmoretti
Mon, 2015-10-26 13:57
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
1,701 by smlewis
Mon, 2014-04-21 06:47
Normal topic hydrogen bond parameters used in detecting h-bonds by pyrosetta
by bharat_46010 » Sun, 2013-07-21 23:44
1
1,705 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Getting interface residues?
by JuliusSu » Wed, 2014-04-16 21:58
2
1,713 by JuliusSu
Thu, 2014-04-17 18:34
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25
1
1,717 by Sergey
Mon, 2014-04-21 06:47
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
1,724 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when trying to import 'get_secstruct'
by quantumnumber » Thu, 2019-04-11 03:50
4
1,742 by quantumnumber
Fri, 2019-05-10 02:25
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
1,762 by drluca77
Mon, 2014-04-21 06:47
Normal topic generate_nonstandard_residue_set Exception
by lah435 » Tue, 2017-06-13 18:28
3
1,765 by lah435
Fri, 2017-06-16 12:24
Normal topic Boost.Python C++/PyRosetta interop
by gipsonb » Wed, 2010-10-06 15:15
1
1,806 by gipsonb
Mon, 2014-04-21 06:47
Normal topic is_aromatic function
by jadolfbr » Mon, 2013-12-02 19:31
2
1,810 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Viewing and modifying hydrogen bond detection criteria
by promero » Tue, 2014-09-16 15:26
1
1,823 by rmoretti
Wed, 2014-09-17 07:29
Normal topic GDT_TS how can I get it with pyrosetta?
by oppopomoz » Thu, 2014-01-09 02:51
1
1,829 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No pdb output file when running ab initio modeling
by bunyaviridae » Thu, 2013-06-20 01:33
1
1,854 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
1,860 by linucks
Mon, 2014-04-21 06:47
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00
1
1,865 by smlewis
Mon, 2014-04-21 06:47
Normal topic Displaying side-chain rotamers in PyMol
by ajasja » Wed, 2014-09-24 08:57
0
1,868 by ajasja
Wed, 2014-09-24 08:57
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,902 by Sergey
Mon, 2014-04-21 06:47
Normal topic Python 2.6
by AndrewBworth » Mon, 2010-02-01 18:49
2
1,943 by AlexI
Mon, 2014-04-21 06:47
Normal topic PyMOL Update
by ac.research » Tue, 2018-04-10 22:07
6
1,950 by Sergey
Tue, 2018-05-15 11:20
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
1,954 by xfliu
Mon, 2014-04-21 06:47
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
1,979 by smlewis
Mon, 2014-04-21 06:47
Normal topic Packing Fraction of atoms in a closed loop or turn
by bharat_46010 » Fri, 2013-08-09 17:40
1
2,011 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pose_from_pdb gives RuntimeError: unidentifiable C++ exception?
by cossio » Thu, 2014-11-27 14:43
1
2,013 by cossio
Fri, 2014-11-28 05:05
Normal topic Adding energies of residues doesnt add up to energy of the entire protein
by astrofunk » Tue, 2010-09-14 11:24
1
2,018 by smlewis
Mon, 2014-04-21 06:47
Normal topic set constraints
by zgcarvalho » Wed, 2010-02-24 09:42
3
2,035 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Using ref2015 and talaris2014 in the same script
by SenyorDrew » Wed, 2017-11-01 10:24
2
2,049 by SenyorDrew
Wed, 2017-11-01 10:39
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,051 by smlewis
Mon, 2014-04-21 06:47
Normal topic Windows Dunbrack10.lib.bin "out dated"
by protos_heis » Thu, 2015-02-26 13:35
2
2,080 by protos_heis
Fri, 2015-02-27 13:38
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,103 by smlewis
Mon, 2014-04-21 06:47
Normal topic RuntimeError: unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:16
1
2,107 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Problems when inserting spin-label R1A
by ajasja » Fri, 2014-06-27 04:14
2
2,109 by ajasja
Thu, 2014-07-03 05:36
Normal topic Coordinates in pose do not match those in PDB
by ajasja » Tue, 2014-10-28 12:29
2
2,144 by ajasja
Thu, 2014-10-30 08:32
Normal topic Amino acid modifications: retinal linked to lysine
by tsikosek » Tue, 2014-01-21 12:52
1
2,154 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Help on Chimera Creator/Homodomain script
by jadolfbr » Mon, 2010-06-14 21:34
1
2,168 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic New Python 3.7
by ac.research » Wed, 2018-08-15 07:00
5
2,175 by MNP1986
Mon, 2018-12-03 04:02
Normal topic Writing out individual residues to a pdbfile
by SenyorDrew » Thu, 2016-12-08 07:33
3
2,177 by SenyorDrew
Thu, 2016-12-08 13:10
Normal topic hbond_sr_bb, hbond_lr_bb, fa_intra_rep energies from ScoreFunction()
by gerdos » Tue, 2017-04-18 04:46
4
2,186 by gerdos
Fri, 2017-04-21 01:53
Normal topic RosettaModel blueprint for PyRosetta
by bbrown11 » Tue, 2015-03-03 13:53
2
2,199 by bbrown11
Wed, 2015-03-04 18:49
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00
1
2,203 by smlewis
Mon, 2014-04-21 06:47
Normal topic ImportError PyUnicodeUCS2
by nunesjulioc » Wed, 2010-02-17 07:29
0
2,206 by nunesjulioc
Mon, 2014-04-21 06:47
Normal topic loop modeling error 'CcdLoopClosureMover' object is not callable
by jai_INMAS » Tue, 2013-10-22 01:49
2
2,228 by jai_INMAS
Mon, 2014-04-21 06:48
Normal topic PyRosetta memory footprint
by LiorZ » Thu, 2016-06-16 04:36
3
2,232 by LiorZ
Fri, 2016-06-17 08:20
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
2,250 by evo_umich
Mon, 2014-04-21 06:47
Normal topic RosettaHoles for PyRosetta - Void Detection/Scoring
by ac.research » Sat, 2017-07-01 11:28
5
2,260 by rmoretti
Thu, 2017-07-06 12:49
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
2,304 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Trying to call pack_rotamers_setup()
by pachecoj » Tue, 2013-07-23 16:07
2
2,328 by Sergey
Mon, 2014-04-21 06:48
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30
3
2,344 by juden99
Mon, 2014-04-21 06:47
Normal topic Can I export command line & result from iPython PyRosetta shell to a text file?
by lanselibai » Mon, 2014-08-25 04:05
2
2,346 by lanselibai
Tue, 2014-08-26 01:49
Normal topic Fix corrupted Backbone
by ac.research » Mon, 2018-03-05 12:48
7
2,392 by ac.research
Tue, 2018-03-13 21:36
Normal topic pose.replace_residue() & incorrect scoring
by msun » Tue, 2015-10-06 10:51
3
2,427 by rmoretti
Wed, 2015-10-07 16:35
Normal topic New Windows build is available for download
by Sergey » Fri, 2014-07-18 13:50
2
2,445 by ajasja
Fri, 2014-08-22 08:32
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00
2
2,467 by msellers
Mon, 2014-04-21 06:47
Normal topic Weird message whenever I try to calculate energies
by astrofunk » Fri, 2010-08-20 05:55
2
2,470 by astrofunk
Mon, 2014-04-21 06:47
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