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PyRosetta - General

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Normal topic GPU computing and PyRosetta
by oppopomoz » Thu, 2013-07-11 05:55
1
3,145 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non canonical aa mutations/force fields/pyrosetta
by Anouk » Wed, 2013-06-19 01:51
12
8,510 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic MakeRotLib documentation for Pyrosetta
by ltassoulas » Sat, 2013-07-06 16:15
1
1,567 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does Rosetta scoring function can distinguish good structure from bad one?
by Victor » Sun, 2013-06-16 21:11
4
2,831 by Victor
Mon, 2014-04-21 06:48
Hot topic HBondEnergy
by bharat_46010 » Wed, 2013-05-15 19:03
15
10,497 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragments picker: -nohom option seems not to work
by oppopomoz » Tue, 2013-05-14 06:31
1
1,823 by linucks
Mon, 2014-04-21 06:47
Normal topic Initializing DockDesignParser in PyRosetta
by LiorZ » Mon, 2013-04-22 01:56
6
3,934 by LiorZ
Mon, 2014-04-21 06:47
Normal topic PyRosetta coding subtleties
by lah435 » Wed, 2013-03-27 02:59
2
3,215 by Sergey
Mon, 2014-04-21 06:47
Normal topic Which score4?
by oppopomoz » Tue, 2013-03-12 06:21
4
4,293 by smlewis
Mon, 2014-04-21 06:47
Normal topic Score of the protein without ligand
by eberhardt » Thu, 2013-03-21 07:29
5
4,101 by eberhardt
Mon, 2014-04-21 06:47
Normal topic Score2 and Score5...aren't hey meant to be different?
by oppopomoz » Wed, 2013-02-20 03:31
2
2,731 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple mover that holds lowest energy pose
by jadolfbr » Fri, 2013-03-15 13:23
3
2,254 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Add new atom
by eberhardt » Thu, 2013-03-14 02:01
4
4,776 by eberhardt
Mon, 2014-04-21 06:47
Normal topic adding nucleotides to a dna model
by jadolfbr » Wed, 2012-12-05 11:40
3
2,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing movers in OSX PyRosetta
by lah435 » Fri, 2012-11-16 15:45
2
2,544 by lah435
Mon, 2014-04-21 06:47
Normal topic Rotamer Libraries in Pyrosetta
by protos_heis » Fri, 2013-01-18 12:02
8
6,747 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when importing protocols.simple_filters
by xfliu » Tue, 2012-10-16 13:37
8
4,401 by xfliu
Mon, 2014-04-21 06:47
Normal topic How to pop off terminus variants
by xfliu » Mon, 2012-09-03 03:12
2
1,908 by xfliu
Mon, 2014-04-21 06:47
Normal topic D070_Refinement.py
by thorx020 » Fri, 2012-09-14 06:40
1
1,591 by smlewis
Mon, 2014-04-21 06:47
Hot topic Monte Carlo usage?
by atruong » Tue, 2012-08-28 13:24
29
17,029 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Send the output of PyRosetta to a PyMOLPyRosettaServer on a remote computer?
by lah435 » Mon, 2012-09-10 16:06
10
6,433 by ggyimesi
Mon, 2014-04-21 06:47
Normal topic Rosetta score vs Experiment
by thorx020 » Tue, 2012-09-04 12:38
3
4,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to read a silent file ?
by Anonymous » Wed, 2012-06-27 09:34
12
6,667 by Anonymous
Mon, 2014-04-21 06:47
Normal topic problems with low-resolution loop refinemet (LoopMover_Perturb_CCD)
by aloctavodia » Thu, 2012-07-26 06:51
9
5,181 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dock antibody at the epitope of antigen
by styang » Fri, 2012-06-22 05:44
3
3,936 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output different favored solutions with PackRotamersMover design
by xfliu » Fri, 2012-07-13 06:23
5
4,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic Allowing cysteines to repack
by eyliaw » Thu, 2012-07-05 14:46
3
2,484 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error in core/scoring/methods/VDW_Energy.cc line: 169
by pepfolder » Thu, 2012-05-31 11:13
2
2,825 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Scoring with CCP4 electron density maps constraints
by xfliu » Thu, 2012-05-03 03:30
0
1,537 by xfliu
Mon, 2014-04-21 06:47
Normal topic Customize Rosetta codes and make it accessible to PyRosetta
by xfliu » Thu, 2012-05-24 06:27
7
3,658 by Sergey
Mon, 2014-04-21 06:47
Normal topic How to optimize the orientations of polar hydrogens in PyRosetta
by xfliu » Sat, 2012-04-28 16:33
5
3,446 by xfliu
Mon, 2014-04-21 06:47
Normal topic Fragment File Reading problem
by Nuria » Tue, 2012-06-12 13:42
1
1,576 by smlewis
Mon, 2014-04-21 06:47
Normal topic BackrubMover options
by AOK » Thu, 2012-05-24 05:06
5
3,073 by AOK
Mon, 2014-04-21 06:47
Normal topic Help with pyRosetta python scripting for protein manipulation
by pepfolder » Thu, 2012-05-31 14:01
5
4,119 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Unpredictible amino acid replacements
by Victor » Wed, 2012-05-09 09:21
6
3,491 by aloctavodia
Mon, 2014-04-21 06:47
Normal topic Energy of individual loop/region
by jadolfbr » Mon, 2012-04-02 13:15
3
2,001 by smlewis
Mon, 2014-04-21 06:47
Normal topic How can i introduce hydrogen bond as constraint?
by sp1020 » Mon, 2012-04-02 05:12
1
1,945 by smlewis
Mon, 2014-04-21 06:47
Normal topic Individual residue repacking causes segmentation fault or "ERROR: seqpos >= 1 ERROR:: Exit from: src/core/conformation/Confo..."
by msellers » Wed, 2012-04-04 12:27
5
4,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA docking
by eschulz » Tue, 2012-02-28 03:04
1
3,210 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error getting MinMover attributes
by assaff » Sun, 2012-03-25 10:54
6
3,429 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Issues PyRosetta?
by ast » Sat, 2012-03-24 03:21
1
1,425 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_Observer to work on MacOS
by cno » Thu, 2012-02-16 09:15
1
1,486 by Sergey
Mon, 2014-04-21 06:47
Normal topic Altering Score/EMapVector
by mmertens » Fri, 2012-01-27 09:33
5
3,015 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Cannot get PyMOL_mover to work on MacOS
by cno » Fri, 2012-02-10 07:24
2
2,965 by cno
Mon, 2014-04-21 06:47
Normal topic rmsd and Lrmsd in loop modeling
by Victor » Tue, 2012-01-24 09:52
3
2,918 by Victor
Mon, 2014-04-21 06:47
Normal topic New files for loop modeling
by Victor » Fri, 2012-02-03 14:36
0
1,059 by Victor
Mon, 2014-04-21 06:47
Normal topic preparation the fragment files for mutants
by Victor » Wed, 2012-02-22 11:04
3
2,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic option removal/KIC
by jadolfbr » Thu, 2012-02-02 16:35
6
3,231 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Go parallel
by assignfit » Tue, 2011-11-29 10:47
4
2,788 by smlewis
Mon, 2014-04-21 06:47
Normal topic Windows native build of PyRosetta 2.011 is ready for download!
by Sergey » Mon, 2011-11-21 18:25
1
1,691 by Sergey
Mon, 2014-04-21 06:47
Normal topic PyRosetta version 2.011 for Mac/Linux is ready to download!
by Sergey » Mon, 2011-11-21 08:51
0
1,172 by Sergey
Mon, 2014-04-21 06:47
Normal topic Problem with sending individual energy terms using PyMOL Mover
by jadolfbr » Fri, 2011-12-23 10:54
2
1,851 by Sergey
Mon, 2014-04-21 06:47
Normal topic libmini.dylib
by evo_umich » Fri, 2011-09-23 14:08
2
2,206 by evo_umich
Mon, 2014-04-21 06:47
Normal topic ∆G calculation script for protein and mutation of AA at each residue
by ara » Tue, 2011-10-25 13:57
6
5,290 by ara
Mon, 2014-04-21 06:47
Normal topic how to use constrains in PyRosetta?
by ast » Mon, 2011-09-05 07:22
0
1,574 by ast
Mon, 2014-04-21 06:47
Normal topic Errors when movers put in a function
by rfschleif » Sat, 2011-10-08 08:41
5
2,920 by msellers
Mon, 2014-04-21 06:47
Normal topic input_pdb
by evo_umich » Sat, 2011-10-01 14:20
3
3,037 by evo_umich
Mon, 2014-04-21 06:47
Normal topic PyRosetta license
by AOK » Fri, 2011-11-11 01:20
1
1,474 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Neutralize the C and N termini
by rosettauser » Mon, 2011-07-25 07:24
1
1,677 by smlewis
Mon, 2014-04-21 06:47
Hot topic Creating a vector1 of AtomID objects
by msellers » Mon, 2011-07-18 06:24
19
9,571 by msellers
Mon, 2014-04-21 06:47
Normal topic Using pose.set_xyz() to move chains causes increase in only pro_close energy
by msellers » Mon, 2011-07-25 06:57
3
2,752 by msellers
Mon, 2014-04-21 06:47
Normal topic (1) Score pose, (2) move atom, (3) score pose
by msellers » Fri, 2011-07-15 11:04
6
3,673 by msellers
Mon, 2014-04-21 06:47
Normal topic how to realize a free bb design? PackMover=fixed bb!
by ast » Wed, 2011-08-31 09:41
1
2,555 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Foldtree setup, jump problem in PyRosetta 2.0
by msellers » Thu, 2011-07-21 12:00
2
2,418 by msellers
Mon, 2014-04-21 06:47
Normal topic Charmm, hydroxyproline, hydrogen atom ID
by rfschleif » Tue, 2011-07-12 11:26
1
2,448 by rfschleif
Mon, 2014-04-21 06:47
Normal topic protein structure prediction
by ravi1709 » Thu, 2011-07-28 00:05
1
1,694 by smlewis
Mon, 2014-04-21 06:47
Normal topic read parameters of metal ions
by Stefan » Tue, 2011-07-19 08:38
2
2,728 by Stefan
Mon, 2014-04-21 06:47
Normal topic Deprotonated LYS
by Arik » Wed, 2011-06-22 16:34
3
2,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic Failure appending a residue
by rfschleif » Thu, 2011-06-16 10:53
2
2,462 by smlewis
Mon, 2014-04-21 06:47
Normal topic Deleting residue one produces a segmentation fault
by rfschleif » Thu, 2011-06-16 07:02
1
1,534 by smlewis
Mon, 2014-04-21 06:47
Normal topic Jump question
by rfschleif » Wed, 2011-06-15 14:00
1
1,834 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pyrosetta energy function
by somayyehzangooei » Mon, 2011-05-09 08:20
6
4,991 by smlewis
Mon, 2014-04-21 06:47
Normal topic Minimization question
by rfschleif » Wed, 2011-05-25 06:59
14
7,776 by Sergey
Mon, 2014-04-21 06:47
Normal topic Define custom potential?
by rfschleif » Fri, 2011-05-06 11:25
2
2,466 by weitzner
Mon, 2014-04-21 06:47
Normal topic Pyrosetta 2.0 - Dunbrak library binary not loading - strange repacking score
by msellers » Wed, 2011-05-11 06:24
3
2,820 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dunbrack Library
by jadolfbr » Tue, 2011-05-10 13:59
3
2,590 by weitzner
Mon, 2014-04-21 06:47
Hot topic SequenceRelax on a loop
by jtmacd » Mon, 2011-04-11 07:53
15
7,617 by ñ
Mon, 2014-04-21 06:47
Normal topic interaction energies between atoms
by Stefan » Thu, 2011-04-14 06:15
3
3,976 by smlewis
Mon, 2014-04-21 06:47
Normal topic adding coordinate constraints
by jtmacd » Tue, 2011-04-12 04:51
11
7,199 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Pyrosetta2
by bharat_46010 » Mon, 2011-02-28 05:00
1
1,660 by Sergey
Mon, 2014-04-21 06:47
Normal topic Strange fold tree problem with classic and fast relax
by jadolfbr » Mon, 2011-03-21 11:58
4
3,332 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic JobDistributor Bug
by brettth » Fri, 2011-03-11 07:00
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Windows version of PyRosetta 2.0 is ready for download!
by Sergey » Fri, 2011-02-11 15:58
0
1,208 by Sergey
Mon, 2014-04-21 06:47
Normal topic How to fold membrane protein in PyRosetta?
by assignfit » Fri, 2011-02-25 21:39
3
2,671 by assignfit
Mon, 2014-04-21 06:47
Normal topic Rosetta Docking server
by hourosetta » Fri, 2011-02-11 08:36
1
2,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic Concatenate Pose
by jadolfbr » Sat, 2011-02-19 21:12
8
5,679 by smlewis
Mon, 2014-04-21 06:47
Normal topic PyRosetta 2.0 Beta Strand Build
by Qulprit » Tue, 2011-02-08 11:30
1
6,363 by weitzner
Mon, 2014-04-21 06:47
Normal topic Username and Password for download link?
by juden99 » Thu, 2011-02-17 03:30
3
2,280 by juden99
Mon, 2014-04-21 06:47
Normal topic Peptide design
by AOK » Thu, 2011-02-03 11:35
3
3,037 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set options under PyRosetta
by lennylv » Thu, 2011-01-06 18:11
1
2,697 by Sergey
Mon, 2014-04-21 06:47
Normal topic The Beta version of PyRosetta 2.0 is ready for download!
by Sergey » Mon, 2011-01-24 10:12
9
4,788 by drluca77
Mon, 2014-04-21 06:47
Normal topic Segmentation fault when reading VMD PDB
by msellers » Mon, 2011-01-03 07:14
6
6,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic Executing the mc simulation of polyalanine fragment
by bharat_46010 » Mon, 2011-01-17 19:18
8
4,905 by smlewis
Mon, 2014-04-21 06:47
Normal topic De novo loop modeling using pyrosetta
by bharat_46010 » Sun, 2011-01-16 17:38
4
3,541 by Sergey
Mon, 2014-04-21 06:47
Normal topic Interface Design
by brettth » Wed, 2010-12-08 07:25
2
3,147 by SunH
Mon, 2014-04-21 06:47
Normal topic Specifying disulfide bonds
by msellers » Thu, 2010-12-02 10:38
1
2,786 by msellers
Mon, 2014-04-21 06:47
Normal topic Units of kT for MC mover
by msellers » Fri, 2010-12-10 05:40
1
2,583 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment for polyAAA
by knutjbj » Mon, 2010-11-29 08:23
1
1,568 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree not correct for multi-chain partners
by msellers » Fri, 2010-12-10 05:35
6
4,408 by msellers
Mon, 2014-04-21 06:47
Normal topic Constraint files, section formatted
by srballard » Fri, 2010-11-05 11:55
2
1,725 by drluca77
Mon, 2014-04-21 06:47
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